View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17371_low_6 (Length: 254)

Name: NF17371_low_6
Description: NF17371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17371_low_6
NF17371_low_6
[»] chr1 (3 HSPs)
chr1 (34-119)||(35285550-35285635)
chr1 (80-119)||(26127338-26127377)
chr1 (189-244)||(35285429-35285480)
[»] chr7 (3 HSPs)
chr7 (80-119)||(28359764-28359803)
chr7 (80-119)||(40417636-40417675)
chr7 (80-112)||(6221044-6221076)
[»] chr4 (4 HSPs)
chr4 (83-119)||(36619879-36619915)
chr4 (80-119)||(47742739-47742778)
chr4 (83-117)||(38575812-38575846)
chr4 (80-117)||(48743544-48743581)
[»] chr2 (3 HSPs)
chr2 (80-112)||(45716445-45716477)
chr2 (86-119)||(19511100-19511133)
chr2 (83-119)||(6599344-6599380)
[»] scaffold0007 (1 HSPs)
scaffold0007 (80-119)||(185445-185484)
[»] chr8 (2 HSPs)
chr8 (80-119)||(44362359-44362398)
chr8 (85-117)||(5323831-5323863)
[»] chr3 (1 HSPs)
chr3 (82-119)||(53653190-53653227)


Alignment Details
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 35285635 - 35285550
Alignment:
Q  34 ttaggtacattttaataataaatattgttaactggtactcccgggcaggaactaaaagtagaaagaaaagtcaaattttacattga 119  Q
    |||| |||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  35285635 ttagatacattttaataatgaatattgttagctggtactcccggacaggaactaaaagtagaaagaaaagtcaaattttacattga 35285550  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 26127377 - 26127338
Alignment:
Q  80 aggaactaaaagtagaaagaaaagtcaaattttacattga 119  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26127377 aggaactaaaagtagaaagaaaagtcaaattttacattga 26127338  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 35285480 - 35285429
Alignment:
Q  189 ccttaacccgtgatccgtagaagttcgttccctaatttatatcattctcttctctg 244  Q
    ||||||||||||| ||||||||||||    ||||||||||||||||||||||||||    
T  35285480 ccttaacccgtgacccgtagaagttc----cctaatttatatcattctcttctctg 35285429  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 28359803 - 28359764
Alignment:
Q  80 aggaactaaaagtagaaagaaaagtcaaattttacattga 119  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  28359803 aggaactaaaagtagaaagaaaagtcaaattttgcattga 28359764  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 40417636 - 40417675
Alignment:
Q  80 aggaactaaaagtagaaagaaaagtcaaattttacattga 119  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  40417636 aggaactaaatgtagaaagaaaagtcaaattttgcattga 40417675  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 6221044 - 6221076
Alignment:
Q  80 aggaactaaaagtagaaagaaaagtcaaatttt 112  Q
    ||||||||||||| |||||||||||||||||||    
T  6221044 aggaactaaaagtggaaagaaaagtcaaatttt 6221076  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 36619879 - 36619915
Alignment:
Q  83 aactaaaagtagaaagaaaagtcaaattttacattga 119  Q
    |||||||| ||||||||||||||||||||||||||||    
T  36619879 aactaaaaatagaaagaaaagtcaaattttacattga 36619915  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 47742739 - 47742778
Alignment:
Q  80 aggaactaaaagtagaaagaaaagtcaaattttacattga 119  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  47742739 aggaactaaaagtagaaagaaatgtcaaattttatattga 47742778  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 117
Target Start/End: Complemental strand, 38575846 - 38575812
Alignment:
Q  83 aactaaaagtagaaagaaaagtcaaattttacatt 117  Q
    ||||||||||| |||||||||||||||||||||||    
T  38575846 aactaaaagtataaagaaaagtcaaattttacatt 38575812  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 48743581 - 48743544
Alignment:
Q  80 aggaactaaaagtagaaagaaaagtcaaattttacatt 117  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  48743581 aggaactaaaagtagaaagaaaaatcaaattttgcatt 48743544  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 45716445 - 45716477
Alignment:
Q  80 aggaactaaaagtagaaagaaaagtcaaatttt 112  Q
    |||||||||||||||||||||||||||||||||    
T  45716445 aggaactaaaagtagaaagaaaagtcaaatttt 45716477  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 19511100 - 19511133
Alignment:
Q  86 taaaagtagaaagaaaagtcaaattttacattga 119  Q
    ||||||||||||||||| ||||||||||||||||    
T  19511100 taaaagtagaaagaaaaatcaaattttacattga 19511133  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 6599344 - 6599380
Alignment:
Q  83 aactaaaagtagaaagaaaagtcaaattttacattga 119  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  6599344 aactaaaagtagaaagaaaagtcaagttttgcattga 6599380  T

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Target: scaffold0007 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 185445 - 185484
Alignment:
Q  80 aggaactaaaagtagaaagaaaagtcaaattttacattga 119  Q
    ||||||||||||||||||||||||| ||||||| ||||||    
T  185445 aggaactaaaagtagaaagaaaagttaaattttgcattga 185484  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 44362398 - 44362359
Alignment:
Q  80 aggaactaaaagtagaaagaaaagtcaaattttacattga 119  Q
    |||||||||||||||||||||| |||||||||| ||||||    
T  44362398 aggaactaaaagtagaaagaaatgtcaaattttgcattga 44362359  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 5323863 - 5323831
Alignment:
Q  85 ctaaaagtagaaagaaaagtcaaattttacatt 117  Q
    |||||| ||||||||||||||||||||||||||    
T  5323863 ctaaaattagaaagaaaagtcaaattttacatt 5323831  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 53653227 - 53653190
Alignment:
Q  82 gaactaaaagtagaaagaaaagtcaaattttacattga 119  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  53653227 gaactaaaagtagaaagaaaagtcaatttttatattga 53653190  T

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