View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17372_high_13 (Length: 233)

Name: NF17372_high_13
Description: NF17372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17372_high_13
NF17372_high_13
[»] chr3 (5 HSPs)
chr3 (15-210)||(10544097-10544284)
chr3 (15-208)||(37193025-37193218)
chr3 (15-133)||(31194198-31194316)
chr3 (15-133)||(52773997-52774115)
chr3 (25-128)||(53979080-53979183)
[»] chr8 (2 HSPs)
chr8 (15-208)||(2997451-2997644)
chr8 (25-128)||(15194062-15194165)
[»] chr5 (1 HSPs)
chr5 (15-208)||(19717702-19717895)
[»] scaffold0014 (1 HSPs)
scaffold0014 (15-133)||(94852-94970)
[»] chr4 (2 HSPs)
chr4 (15-133)||(13988947-13989065)
chr4 (16-128)||(18254929-18255041)
[»] chr6 (2 HSPs)
chr6 (15-208)||(34824745-34824938)
chr6 (15-137)||(26134405-26134527)
[»] chr7 (1 HSPs)
chr7 (15-133)||(16257487-16257605)
[»] scaffold0164 (1 HSPs)
scaffold0164 (25-128)||(26189-26292)
[»] chr1 (1 HSPs)
chr1 (25-128)||(49640116-49640219)


Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 10544284 - 10544097
Alignment:
Q  15 aaaatcaagaccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||       
T  10544284 aaaatcaagaccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttaaaaacc--- 10544188  T
Q  115 ttactccctataggcttgacattaggaggagtttgcacaattgttcaggtaccattcttagccaaagcatctaattcagaatccatagcctttacc 210  Q
         ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  10544187 -----ccctataggcttgacattaggaggagtttgcacaattgttcaggtactattcttagccaaaacatctaattcagaatccatagcctttacc 10544097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 37193218 - 37193025
Alignment:
Q  15 aaaatcaagaccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaa 114  Q
    ||||||||  |||||||||||||||||||| || || |||| |||  |||||||| |||| || || ||||| ||||| |  || || |||||||||||     
T  37193218 aaaatcaactccttcaacttgattatatcctttagccaccagtctagctttgtatctttctatactgccatctgccttgtgcttaattttataaacccac 37193119  T
Q  115 ttactccctataggcttgacattaggaggagtttgcacaattgttcaggtaccattcttagccaaagcatctaattcagaatccatagccttta 208  Q
    ||||| || |||||||| |||||  |||||   |  ||||| |  || || ||||||||||| || || |||||||||||||||||||| ||||    
T  37193118 ttactaccaataggcttcacattgtgaggaagatcaacaatagaccaagttccattcttagctaatgcttctaattcagaatccatagctttta 37193025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 133
Target Start/End: Original strand, 31194198 - 31194316
Alignment:
Q  15 aaaatcaagaccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaa 114  Q
    |||||||| |||||||||||||||||| || || || |||| |||| | |||||  | || ||||||||||| ||||||| |||||| ||||| |||||     
T  31194198 aaaatcaataccttcaacttgattataacctttagccaccagtctggccttgtacctctctatgctcccatctgccttatgtttgattttatacacccat 31194297  T
Q  115 ttactccctataggcttga 133  Q
    ||||| || ||||| ||||    
T  31194298 ttactaccaataggtttga 31194316  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 52774115 - 52773997
Alignment:
Q  15 aaaatcaagaccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaa 114  Q
    |||||||| |||||||||||||||||| || || || |||| |||| | |||||  | || ||||||||||| ||||||| |||||| ||||| |||||     
T  52774115 aaaatcaataccttcaacttgattataacctttagccaccagtctggccttgtacctctctatgctcccatctgccttatgtttgattttatacacccat 52774016  T
Q  115 ttactccctataggcttga 133  Q
    ||||| || ||||| ||||    
T  52774015 ttactaccaataggtttga 52773997  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 53979183 - 53979080
Alignment:
Q  25 ccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattactcccta 124  Q
    |||||||||||| |||| || ||||| ||||||||  |||| ||| |||| ||  ||||||| | |||||  |||||||| |||||||| || |||||||    
T  53979183 ccttcaacttgagtatagccttttgctaccaatctagctttatatctttctatagtcccatctgacttatgcttgatcttgtaaacccatttgctcccta 53979084  T
Q  125 tagg 128  Q
    ||||    
T  53979083 tagg 53979080  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 2997644 - 2997451
Alignment:
Q  15 aaaatcaagaccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaa 114  Q
    ||||||||  |||||||||||||||||||| || || |||| |||  |||||||| |||| || || ||||| ||||| |  || || |||||||||||     
T  2997644 aaaatcaactccttcaacttgattatatcctttagccaccagtctagctttgtatctttctatactgccatctgccttgtgcttaattttataaacccac 2997545  T
Q  115 ttactccctataggcttgacattaggaggagtttgcacaattgttcaggtaccattcttagccaaagcatctaattcagaatccatagccttta 208  Q
    ||||| || |||||||| |||||  |||||   |  ||||| |  || || |||||||||||||| || ||||||||||| |||||||| ||||    
T  2997544 ttactaccaataggcttcacattgtgaggaagatcaacaatagaccaagttccattcttagccaatgcttctaattcagattccatagctttta 2997451  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 15194165 - 15194062
Alignment:
Q  25 ccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattactcccta 124  Q
    |||||||||||| |||| || ||||| ||||||||  |||| ||| |||| ||  ||||||| | |||||  |||||||| |||||||| || |||||||    
T  15194165 ccttcaacttgagtatagccttttgctaccaatctagctttatatctttctatagtcccatctgacttatgcttgatcttgtaaacccatttgctcccta 15194066  T
Q  125 tagg 128  Q
    ||||    
T  15194065 tagg 15194062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 19717702 - 19717895
Alignment:
Q  15 aaaatcaagaccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaa 114  Q
    |||||||| |||||||||||||||||| |||||  | |||| |||  | |||||| ||||||| || |||||| | |||| |||||||||||| |||||     
T  19717702 aaaatcaataccttcaacttgattataacccttaaccaccagtcttgccttgtatctttcaatactaccatcaactttatgtttgatcttatacacccat 19717801  T
Q  115 ttactccctataggcttgacattaggaggagtttgcacaattgttcaggtaccattcttagccaaagcatctaattcagaatccatagccttta 208  Q
    || || || || ||||| | |||||| |||   |  |||||||| || || ||||||| | | || |||||||||||| ||| |||||||||||    
T  19717802 ttgcttccaattggcttaatattaggtggaagatcaacaattgtccaagttccattctaatcgaatgcatctaattcaaaattcatagccttta 19717895  T

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Target: scaffold0014 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 133
Target Start/End: Original strand, 94852 - 94970
Alignment:
Q  15 aaaatcaagaccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaa 114  Q
    |||||||| |||||||||||||||||| || || || |||| |||| | |||||  | || ||||||||||| ||||||| |||||| ||||| |||||     
T  94852 aaaatcaataccttcaacttgattatagcctttagccaccagtctggccttgtacctctctatgctcccatctgccttatgtttgattttatacacccat 94951  T
Q  115 ttactccctataggcttga 133  Q
    ||||| || ||||| ||||    
T  94952 ttactaccaataggtttga 94970  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 13989065 - 13988947
Alignment:
Q  15 aaaatcaagaccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaa 114  Q
    |||||||| |||||||||||||||||| || || || |||| |||| | |||||  | || ||||||||||| ||||||| |||||| ||||| |||||     
T  13989065 aaaatcaataccttcaacttgattatagcctttagccaccagtctggccttgtacctctctatgctcccatctgccttatgtttgattttatacacccat 13988966  T
Q  115 ttactccctataggcttga 133  Q
    ||||| || ||||| ||||    
T  13988965 ttactaccaataggtttga 13988947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 18255041 - 18254929
Alignment:
Q  16 aaatcaagaccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaat 115  Q
    |||||||  |||||||||||| |||| |||||||| ||||||||  |||| ||| |||| ||  ||||||| | |||||  |||||||| |||||||| |    
T  18255041 aaatcaatcccttcaacttgagtatagccctttgccaccaatcttgctttatatctttctatagtcccatctgacttatgcttgatcttgtaaacccatt 18254942  T
Q  116 tactccctatagg 128  Q
    | |||||||||||    
T  18254941 tgctccctatagg 18254929  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 34824938 - 34824745
Alignment:
Q  15 aaaatcaagaccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaa 114  Q
    ||||||||  |||||||||||||||||||| || || |||| |||  |||||||| |||| || || ||||| ||||| |  || || |||||||||||     
T  34824938 aaaatcaactccttcaacttgattatatcctttagccaccagtctagctttgtatctttctatactgccatctgccttgtgcttaattttataaacccac 34824839  T
Q  115 ttactccctataggcttgacattaggaggagtttgcacaattgttcaggtaccattcttagccaaagcatctaattcagaatccatagccttta 208  Q
    ||||| || |||||||| |||||  |||||   |  ||||| |  || || ||||||||||| || || ||||||||||| |||||||| ||||    
T  34824838 ttactaccaataggcttcacattgtgaggaagatcaacaatagaccaagttccattcttagctaatgcttctaattcagattccatagctttta 34824745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 26134527 - 26134405
Alignment:
Q  15 aaaatcaagaccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaa 114  Q
    ||||||||  ||||||||||||||||| || || || |||| |||| |  ||||  | || ||||||||||| ||||||| |||||| ||||| |||||     
T  26134527 aaaatcaatgccttcaacttgattatagcctttagccaccagtctggccatgtacctctctatgctcccatctgccttatgtttgattttatacacccat 26134428  T
Q  115 ttactccctataggcttgacatt 137  Q
    ||||| || ||||| ||||||||    
T  26134427 ttactaccaataggtttgacatt 26134405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 16257605 - 16257487
Alignment:
Q  15 aaaatcaagaccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaa 114  Q
    ||||||||  ||||||||||||||||| || || || |||| |||| | |||||  | || ||||||||||| ||||||| |||||| ||||| |||||     
T  16257605 aaaatcaatgccttcaacttgattatagcctttagccaccagtctggccttgtacctctctatgctcccatctgccttatgtttgattttatacacccat 16257506  T
Q  115 ttactccctataggcttga 133  Q
    ||||| || ||||| ||||    
T  16257505 ttactaccaataggtttga 16257487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 26189 - 26292
Alignment:
Q  25 ccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattactcccta 124  Q
    |||||||||||| |||| || ||||| ||||||||  |||| ||| |||| ||  ||||||| | |||||  |||||||| |||||||| || |||||||    
T  26189 ccttcaacttgagtatagccttttgctaccaatctagctttatatctttctatagtcccatctgacttatgcttgatcttgtaaacccatttgctcccta 26288  T
Q  125 tagg 128  Q
    ||||    
T  26289 tagg 26292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 49640116 - 49640219
Alignment:
Q  25 ccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattactcccta 124  Q
    |||||||||||| |||| || ||||| ||||||||  |||| ||| |||| ||  ||||||| | |||||  |||||||| |||||||| || |||||||    
T  49640116 ccttcaacttgagtatagccttttgctaccaatctagctttatatctttctatagtcccatctgacttatgcttgatcttgtaaacccatttgctcccta 49640215  T
Q  125 tagg 128  Q
    ||||    
T  49640216 tagg 49640219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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