View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17372_high_14 (Length: 233)
Name: NF17372_high_14
Description: NF17372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17372_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 1223992 - 1224156
Alignment:
| Q |
11 |
gagatgaacaatggaaaagagaaatacatgcatttcaccgttctatttacaaaataattagaaatgattttgatcaagcacattacaagttagtttcatt |
110 |
Q |
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| T |
1223992 |
gagaagaacaatggaaaagagaaatacatgtatttcactgttctatttacaaaataattagaaatgattttgatcaagcacattacaagttagtttcatt |
1224091 |
T |
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| Q |
111 |
ttaacatctcccttaaactcaaatagttgttgatgcaactgttttgagttcagaaactgaggtac |
175 |
Q |
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| T |
1224092 |
ttaacatctcccttaaactcaaatagttgttgatgcaactgttttgagttcggaaactgaggtac |
1224156 |
T |
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Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 1201848 - 1201676
Alignment:
| Q |
16 |
gaacaatggaaaagagaaatacatgcatttcacc----gttctatttacaaaataattagaaatgattttgat---------caagcacattacaagtta |
102 |
Q |
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| T |
1201848 |
gaacaatggaaaagagaaatacacgtatttcattcattgttctattttcaaattaattagagatgattttgatatcgatgatcaagcacattacaagtta |
1201749 |
T |
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| Q |
103 |
gtttcattttaacatctcccttaaactcaaatagttgttgatgcaactgttttgagttcagaaactgaggtac |
175 |
Q |
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| T |
1201748 |
atttcattttaacatctcccttaaactcaaatagttgtagatgcaactgttttgagttcgaaaactgaggtac |
1201676 |
T |
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