View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17372_high_4 (Length: 419)
Name: NF17372_high_4
Description: NF17372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17372_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 393
Target Start/End: Original strand, 35309854 - 35310228
Alignment:
| Q |
19 |
tagatatccacaataaagtagtgtatctagcacatgaaattaatatggtgtagcctaacccttgacttgggaaaagttgtgtataatgcataattgcata |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35309854 |
tagatatccacaataaagtagtgtatctagcacatgaaattaatatggtgtagcctaacccttgacttgggaaaagttgtgtataatgcataattgcata |
35309953 |
T |
|
| Q |
119 |
tatgaatttaggggaggtatatatgaaatgaaactatgaaattgattgtagtagctagcaagtggggtaattttaaataggaattgaccgtatagttgtt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35309954 |
tatgaatttaggggaggtatatatgaaatgaaactatgaaattgattgtagtagctagcaagtggggtaattttaaataggaattgaccgtatagttgtt |
35310053 |
T |
|
| Q |
219 |
atattatgatgaatctttatcaatggatagaatttgtcgactttgtcttcaacatacatatcaaatttgatgtaaccattcgttgattttggtgaaacaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35310054 |
atattatgatgaatctttatcaatggatagaatttgtcgactttgtcttcaacatacatatcaaatttgatgtaaccattcgttgattttggtgaaacaa |
35310153 |
T |
|
| Q |
319 |
tacaataatgccaaaccatgaagaaaaagaaatgacttgcttaatttgttgatgttctgtactgtattgcactcc |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35310154 |
tacaataatgccaaaccatgaagaaaaagaaatgacttgcttaatttgttgatgttctgtaatgtattgcactcc |
35310228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University