View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17372_high_7 (Length: 346)
Name: NF17372_high_7
Description: NF17372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17372_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 4068803 - 4068491
Alignment:
| Q |
18 |
atgaatattatttcttcatttattcaaaatcaaatcaactacataaaaagaacttaagttttttctgtcttcttcacatcttcaaaatcggattaca--t |
115 |
Q |
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| T |
4068803 |
atgaatattatttcttcatttattcaaaatcaaatcaactgcataaaaagaacttaagttttttctttcttcttcacatcttcaaaatcggattacacat |
4068704 |
T |
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| Q |
116 |
attttcatattttaaaagtgttgtaggattatttttcttctattttcaacactattaaaaatgcatatctctatatgtacatgagtaaacaatcattcaa |
215 |
Q |
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| T |
4068703 |
attttcatattttaaaagtgttgtaggattatttttcttctattttcaacactattaaaaatgcatatctctatatgtacatgagtaaacaatcattcaa |
4068604 |
T |
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| Q |
216 |
aatcatctatcatacaagtttgtatttgattttccaccaaatttataggagaaaacttttttcttagtctcattttgtatttagttaggcaagatacagt |
315 |
Q |
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| T |
4068603 |
aatcatctatcatacaagtttgtatttgattttccaccaaatttattggagaaaacttttttcttagtctcattttgtatttagttaggcaagatacagt |
4068504 |
T |
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| Q |
316 |
tttaagtagaagc |
328 |
Q |
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| T |
4068503 |
tttaagtagaagc |
4068491 |
T |
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