View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17372_low_1 (Length: 726)
Name: NF17372_low_1
Description: NF17372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17372_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 334 - 708
Target Start/End: Original strand, 6447679 - 6448058
Alignment:
| Q |
334 |
gatgttgcatcaaataacaaaatatcttttttaaaaacaaagggagtttt-ttgaccttacggttcactcattagggcattattatcccatgattaatct |
432 |
Q |
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| T |
6447679 |
gatgttgcatcaaataacaaaatatcttttt-aaaaacaaagggagtttttttgaccttacggttcactcattagggcattattatcccatgattaatct |
6447777 |
T |
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| Q |
433 |
tgaatgacgatttggcatttgccacaaataaggtcttgctacctaaaagctgccatacttttacaaaaggactaattaagcatgtttagaggtttggtta |
532 |
Q |
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| T |
6447778 |
tgaatgacgatttgccatttgccacaaataaggtcttgctacctaaaagctgccatacttttacaaaaggactaattaagcatgtttagaggtttggtta |
6447877 |
T |
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| Q |
533 |
tttgaaccaacaataccaactccttgctacatatagagatttcttaattaactattgattagagtaatgtattgtggacc-----atgtaaagtaatgtc |
627 |
Q |
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| T |
6447878 |
tttgaaccaacaataccaactccttgctacatatagagatttcttaattaactattgattagagtaatgtattgtggaccatgtaatgtaatgtaatgtc |
6447977 |
T |
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| Q |
628 |
gtggagcacatcagcctaaacggcgttaatttcggtgattccttgctttcttttttgtcgtttatttgatactcaaagtgt |
708 |
Q |
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| T |
6447978 |
gtggagcacatcagcctaaacggcgttaatttcggtgattccttgctttcttttttgtcgtttatttgatactcaaagtgt |
6448058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 14 - 255
Target Start/End: Original strand, 6447421 - 6447667
Alignment:
| Q |
14 |
taatacttgatcgatataagttagtgaaaagattattctctatttcatttatannnnnnnc-----atctaatgtatcatttattgtgggacggagggaa |
108 |
Q |
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| T |
6447421 |
taatacttgatcgatataagttagtgaaaagattattctctatttcatttatatattattttttttatctaatgtatcatttattgtgggacggaggaaa |
6447520 |
T |
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| Q |
109 |
tatataattcttacttaagttgcatgtaagttacttagagagatcactatcttttgaaagagaaatgataccttaacatcaaagtttcgatatgtcaaat |
208 |
Q |
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| T |
6447521 |
tatataattcttacttaagttgcatgtaagttacctagagagatcactatcttttgaaagagaaatgataccttaacatcaaagtttcgatatatcaaat |
6447620 |
T |
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| Q |
209 |
atatttattgtcatttggttcttaaatgtaattttaaaatgcgtgta |
255 |
Q |
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| T |
6447621 |
atgtttattgtcatttggttcttacatgtaattttaaaatgcgtgta |
6447667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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