View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17372_low_10 (Length: 281)
Name: NF17372_low_10
Description: NF17372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17372_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 43878766 - 43878515
Alignment:
| Q |
20 |
tccaaagatgaaacatttgaagtttttgagtgnnnnnnnaagtaaaaatctggtcttgcaaatggtttttcttagaagcatttgtggttctggtctgatg |
119 |
Q |
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| T |
43878766 |
tccaaagatgaaacatttgaagtttttgagtgtttttttaagtaaaaatctggtcttgcaaatggtttttcttagaagcatttgtggttctggtctgatg |
43878667 |
T |
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| Q |
120 |
tgatgattgaagagaggttttcttgtgtattctccaattttgtcctcacttagacttgtatatatataaagagatgttcactattcctaaggttaccaaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43878666 |
tgatgattgaagagaggttttcttgtgtattctccaattttgtcctcacttagacttgtatatatataaagagatgttcactattcctaaggttaccaaa |
43878567 |
T |
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| Q |
220 |
agaaaaatcaattgtcctataaagggtttgtgttgtatttcctttgcctatg |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43878566 |
agaaaaatcaattgtcctataaagggtttgtgttgtatttcctttgtctatg |
43878515 |
T |
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