View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17372_low_14 (Length: 247)
Name: NF17372_low_14
Description: NF17372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17372_low_14 |
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| [»] scaffold0024 (1 HSPs) |
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| [»] scaffold0742 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 231
Target Start/End: Original strand, 122691 - 122913
Alignment:
| Q |
9 |
gattatactgatatatgtctcatatatttgtattatgtattagttttcatgataattgtacacatactatgttcttttatatcatgtactttttaggtag |
108 |
Q |
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| T |
122691 |
gattatactgatatatgtctcatatatttgtattatgtactagttttcatgataattgtacacatactatgttcttttatatcatgtactttttaggtag |
122790 |
T |
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| Q |
109 |
tgcatatatattcaaacagattatgtattttgtatgcttcagattgtacttattatggaattatcagacatgtgtgtaatgccttttcatttagacgtaa |
208 |
Q |
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| T |
122791 |
tgcatatatattcaaacagattatgtattttgtatgcttcagattgtacttattatggaattatcagacatgtgtgtaatgccttttcatttagacagaa |
122890 |
T |
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| Q |
209 |
tttgtgtagtactttattgtttc |
231 |
Q |
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||||||||||| ||||||||||| |
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| T |
122891 |
tttgtgtagtaatttattgtttc |
122913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0742 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0742
Description:
Target: scaffold0742; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 1217 - 1315
Alignment:
| Q |
9 |
gattatactgatatatgtctcatatatttgtattatgtattagttttcatgataattgtacacatactatgttcttttatatcatgtactttttaggtag |
108 |
Q |
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|||||||||||||| |||||||| ||||||||||||| ||||||||||||| |||||||||| |||||||||| |||||| ||||||||||||||||| |
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| T |
1217 |
gattatactgatat--gtctcatacttttgtattatgtactagttttcatgatgattgtacacaaactatgttctattatattatgtactttttaggtag |
1314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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