View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17372_low_19 (Length: 231)
Name: NF17372_low_19
Description: NF17372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17372_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 19604208 - 19604068
Alignment:
| Q |
18 |
ggtagcaactgagaacaatgaggatgtattttgatgaatttgatttgggatctttgtaatcgtgagtgtataaataatgggttgatttgagaatggaaga |
117 |
Q |
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| T |
19604208 |
ggtagcaactgagaacaatgaggatgtattttgatgaatttgatttgggatctttgtaatagtgagtgtatgaataatgggttgatttgagaatggaaga |
19604109 |
T |
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| Q |
118 |
attgttgtt---ttgttgtggatgttgatgccatggaaggg |
155 |
Q |
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| T |
19604108 |
attgttgttgtgttgttgtggatgttgatgccatggaaggg |
19604068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 3030839 - 3030699
Alignment:
| Q |
18 |
ggtagcaactgagaacaatgaggatgtattttgatgaatttgatttgggatctttgtaatcgtgagtgtataaataatgggttgatttgagaatggaaga |
117 |
Q |
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| T |
3030839 |
ggtagcaactgagaacaatgaggatgtattttgatgaatttgatttgggatcttggtaatagtgagtgtatgaataatgggttgatttgagaatggaaga |
3030740 |
T |
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| Q |
118 |
attgttgtt---ttgttgtggatgttgatgccatggaaggg |
155 |
Q |
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| T |
3030739 |
attgttgttgtgttgttgtggatgttgatgccatggaaggg |
3030699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 14712356 - 14712453
Alignment:
| Q |
18 |
ggtagcaactgagaacaatgaggatgtattttgatgaatttgatttgggatctttgtaatcgtgagtgtataaataatgggttgatttgagaatggaa |
115 |
Q |
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| T |
14712356 |
ggtagcatctgagaatagtgaggatgttttttgatgaatttgatttgggatcttagtaatagtgagggtatgaataatgggttgatttgagaatggaa |
14712453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 6244078 - 6244172
Alignment:
| Q |
18 |
ggtagcaactgagaacaatgaggatgtattttgatgaatttgatttgggatctttgtaatcgtgagtgtataaataatgggttgatttgagaatg |
112 |
Q |
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| T |
6244078 |
ggtagcaactgagaatagtgaggatgtattttgatgaatttgatttgggatattggtaatagtgagtgtatgaataatgggttgatttgagaatg |
6244172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 4778453 - 4778550
Alignment:
| Q |
18 |
ggtagcaactgagaacaatgaggatgtattttgatgaatttgatttgggatctttgtaatcgtgagtgtataaataatgggttgatttgagaatggaa |
115 |
Q |
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| T |
4778453 |
ggtagcatctgagaatagtgaggatgttttttgatgaatttgatttgggatcttagtaatagtgagtgtatgaataatgggttgatttgagaatggaa |
4778550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 6244195 - 6244231
Alignment:
| Q |
119 |
ttgttgttttgttgtggatgttgatgccatggaaggg |
155 |
Q |
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| T |
6244195 |
ttgttgtgttgttgtggatgctgatgccatggaaggg |
6244231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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