View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17372_low_2 (Length: 491)
Name: NF17372_low_2
Description: NF17372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17372_low_2 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] scaffold0779 (1 HSPs) |
| | |
|
| [»] scaffold0329 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 20 - 491
Target Start/End: Complemental strand, 10544855 - 10544384
Alignment:
| Q |
20 |
agggtgtgctagcaggtttagatcctaataagccagaagaatctaaaagttctagacaatacttcctttgtgaaacactaatgcctgcattagagtgagc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10544855 |
agggtgtgctagcaggtttagatcctaataagccagaagaatctaaaaggtctagacaatacttcctttgtgaaacactaatgcctgcattagagtgagc |
10544756 |
T |
|
| Q |
120 |
aatttccaaccctaagaaatacttgagaactcctaaatccttgatcttgaatttggaatctaaaatggatttgattctatcaaattcatgaagagaagag |
219 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10544755 |
aatttccaaccctaagaaatccttgagaactcctaaatccttgatcttgaatttggaatctaaaatggatttgattctatcaaattcatgaagagaagag |
10544656 |
T |
|
| Q |
220 |
cctaccaggatgatgtcatcaacatacaccaacaaaggtgtgaaatcagaaccatgtgcattgatgaagagggagtaattagaatttgactgtgtgtatc |
319 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10544655 |
cctgccaggatgatgtcatcaacatacaccaacaaagttgtgaaatcagaaccatgtgcattgatgaagagggagtaatcagaatttgactgtgtgtatt |
10544556 |
T |
|
| Q |
320 |
cttcactaagtaatagtgaagtcaatttctcataccactcgcgaccggcttgcttcaaaccatagagacccttctgtaatttgctaacagtgtttggagc |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10544555 |
cttcactaagtaatagtgaagtcaatttctcataccacttgcgagtggcttgcttcaaaccatagagactcttctgtaatttgctaacagtgtttggagc |
10544456 |
T |
|
| Q |
420 |
actatcaacaccatcagggatactcctatatacattttcttgcaaatctccatgaaggaaagcattgtttac |
491 |
Q |
| |
|
||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10544455 |
actatcaacactatcagggatactcttgtatacattttcttgcaaatctccatgaaggaaagcattgtttac |
10544384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 446 - 491
Target Start/End: Original strand, 19585643 - 19585688
Alignment:
| Q |
446 |
tatatacattttcttgcaaatctccatgaaggaaagcattgtttac |
491 |
Q |
| |
|
|||| |||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19585643 |
tataaacatcttcttgtaaatctccatgaaggaaagcattgtttac |
19585688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 491
Target Start/End: Complemental strand, 37193436 - 37193312
Alignment:
| Q |
367 |
gcttgcttcaaaccatagagacccttctgtaatttgctaacagtgtttggagcactatcaacaccatcagggatactcctatatacattttcttgcaaat |
466 |
Q |
| |
|
||||||||||||||||| || | ||| |||||||||| ||| ||||||| |||||| ||||| || || ||| || | || ||||| |||||||||| |
|
|
| T |
37193436 |
gcttgcttcaaaccatataggctcttatgtaatttgcaaaccttgtttggtgcactagagacaccttctggtatattcatgtaaacattctcttgcaaat |
37193337 |
T |
|
| Q |
467 |
ctccatgaaggaaagcattgtttac |
491 |
Q |
| |
|
| ||||| || |||||||| ||||| |
|
|
| T |
37193336 |
caccatgtagaaaagcattatttac |
37193312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 75 - 207
Target Start/End: Complemental strand, 20078192 - 20078060
Alignment:
| Q |
75 |
acaatacttcctttgtgaaacactaatgcctgcattagagtgagcaatttccaaccctaagaaatacttgagaactcctaaatccttgatcttgaatttg |
174 |
Q |
| |
|
||||||||||||||| |||| ||||||| | ||||||||||||| |||||| |||||||| || ||||||| |||||||| || |||||||| | |
|
|
| T |
20078192 |
acaatacttcctttgggaaattgaaatgccttctttagagtgagcaacttccaatcctaagaagtatttgagaatgcctaaatctttaatcttgaaatga |
20078093 |
T |
|
| Q |
175 |
gaatctaaaatggatttgattctatcaaattca |
207 |
Q |
| |
|
| ||||| ||| ||||||||||| | ||||||| |
|
|
| T |
20078092 |
gcatctagaatagatttgattctttgaaattca |
20078060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 491
Target Start/End: Complemental strand, 34825156 - 34825032
Alignment:
| Q |
367 |
gcttgcttcaaaccatagagacccttctgtaatttgctaacagtgtttggagcactatcaacaccatcagggatactcctatatacattttcttgcaaat |
466 |
Q |
| |
|
||||||||||||||||| || | ||| |||||||||| ||| ||||||| |||||| ||||| || || ||| || | || ||||| |||||||||| |
|
|
| T |
34825156 |
gcttgcttcaaaccatataggctcttatgtaatttgcaaaccttgtttggtgcactagagacaccttctggtatattcatgtaaacattctcttgcaaat |
34825057 |
T |
|
| Q |
467 |
ctccatgaaggaaagcattgtttac |
491 |
Q |
| |
|
| ||||| || |||||||| ||||| |
|
|
| T |
34825056 |
caccatgtagaaaagcattatttac |
34825032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 491
Target Start/End: Complemental strand, 33460999 - 33460875
Alignment:
| Q |
367 |
gcttgcttcaaaccatagagacccttctgtaatttgctaacagtgtttggagcactatcaacaccatcagggatactcctatatacattttcttgcaaat |
466 |
Q |
| |
|
|||||||||||||||||||| | ||| ||||| ||| ||| ||||||| |||||| ||||| || || ||| || | || ||||| |||||||||| |
|
|
| T |
33460999 |
gcttgcttcaaaccatagaggctcttatgtaacttgaaaaccttgtttggtgcactagagacaccttctggtatattcatgtaaacattctcttgcaaat |
33460900 |
T |
|
| Q |
467 |
ctccatgaaggaaagcattgtttac |
491 |
Q |
| |
|
| ||||| || |||||||| ||||| |
|
|
| T |
33460899 |
caccatgtagaaaagcattatttac |
33460875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0779 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0779
Description:
Target: scaffold0779; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 172
Target Start/End: Complemental strand, 5486 - 5387
Alignment:
| Q |
73 |
agacaatacttcctttgtgaaacactaatgcctgcattagagtgagcaatttccaaccctaagaaatacttgagaactcctaaatccttgatcttgaatt |
172 |
Q |
| |
|
|||||||| || ||||| || || |||| ||||| ||||||||||||| |||||| || |||||||| || || | |||||||||||| || ||||||| |
|
|
| T |
5486 |
agacaatattttctttgggatactgtaattcctgctttagagtgagcaacttccaaacccaagaaatatttaaggattcctaaatccttaattttgaatt |
5387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 491
Target Start/End: Complemental strand, 12357 - 12312
Alignment:
| Q |
446 |
tatatacattttcttgcaaatctccatgaaggaaagcattgtttac |
491 |
Q |
| |
|
|||| |||| |||||| |||||||||||||| |||||||||||||| |
|
|
| T |
12357 |
tataaacatcttcttgtaaatctccatgaagaaaagcattgtttac |
12312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 491
Target Start/End: Complemental strand, 52779028 - 52778983
Alignment:
| Q |
446 |
tatatacattttcttgcaaatctccatgaaggaaagcattgtttac |
491 |
Q |
| |
|
|||| |||| |||||| |||||||||||||| |||||||||||||| |
|
|
| T |
52779028 |
tataaacatcttcttgtaaatctccatgaagaaaagcattgtttac |
52778983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University