View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17372_low_5 (Length: 405)
Name: NF17372_low_5
Description: NF17372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17372_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 96 - 398
Target Start/End: Complemental strand, 8033649 - 8033339
Alignment:
| Q |
96 |
aaagagtcatgtgtacatcacgatttgtgtgatttacataatattcaaaatttgttttttaatttaaaatccatgatatatt---------tttgtcatt |
186 |
Q |
| |
|
|||||||||| | ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
8033649 |
aaagagtcatatttacttcatgatttgtgtgatttacataatattcaaaatttgttttttaatttaaaatccatgatatattaattgtgtttttgtcgtt |
8033550 |
T |
|
| Q |
187 |
tctttaattattaaatcttacatatgtcgttgtctgatatgtatatttaaaaggcttctcattgttaattgattcatgcaaaatcagttcacaaaattta |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
8033549 |
tctttaattattaaatcttacatatgtcgttgtctgatatgtatatttaaaaggcttctcattgttaattgatccatgcaaaatcagttcacaatattta |
8033450 |
T |
|
| Q |
287 |
atattgtaatggctagtttcttggcagaatttaagtaatttattttttagatcatttttatcaacaaaaagaaaaatttgttgtttattggacctaaaga |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8033449 |
atattgtaatggctagtttcttggcagaattgaagt-atttattttttagatcatttttatcaacaaaaagaaaaatttgttgtttattggaactaaaga |
8033351 |
T |
|
| Q |
387 |
tagttgatgatg |
398 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
8033350 |
tagttggtgatg |
8033339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 8033764 - 8033673
Alignment:
| Q |
15 |
aagaagtatgtattttttgtagaattttttggaggttcatgcatatagttggtggt--tatttctaattgaaatgcatgattcaaagagtcat |
105 |
Q |
| |
|
||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
8033764 |
aagaagtatgtattttttgtaga-tttcttggtggttcatgcatatagttggtggtattatttctaattgaaatgcatgatttaaagagtcat |
8033673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 119 - 263
Target Start/End: Original strand, 4898183 - 4898339
Alignment:
| Q |
119 |
tttgtgtgatttacataatattcaaaatttgttttttaatttaaaatccatgatatatt---------tttgtcatttctttaattatta------aatc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||| || ||||| ||||||||||||||| |||| |
|
|
| T |
4898183 |
tttgtgtgatttacataatattcaaaatttgttttt-aatttaaaattcatgataacttgattgtgcttttgtggtttctttaattattattattaaatc |
4898281 |
T |
|
| Q |
204 |
ttacatatgtcgttgtctgatatgtatatttaaaaggcttctcattgttaattgattcat |
263 |
Q |
| |
|
||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4898282 |
ttacatatgcagatgtctgatat--atatttaaaaggcttctcattgttaattgattcat |
4898339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 4898083 - 4898154
Alignment:
| Q |
38 |
attttttggaggttcatgcatatagttggtggt--tatttctaattgaaatgcatgattcaaagagtcatgt |
107 |
Q |
| |
|
|||| |||| |||||| |||||||||||||||| ||||| | ||| ||||||||||||||||||||||||| |
|
|
| T |
4898083 |
atttgttggtggttcacgcatatagttggtggtattatttgtgattaaaatgcatgattcaaagagtcatgt |
4898154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 23404972 - 23405025
Alignment:
| Q |
120 |
ttgtgtgatttacataatattcaaaatttgttttttaatttaaaatccatgata |
173 |
Q |
| |
|
|||||| ||||| ||||||||||||||| |||||| |||||||||| |||||| |
|
|
| T |
23404972 |
ttgtgtaatttatctaatattcaaaatttattttttgatttaaaatcaatgata |
23405025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University