View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17372_low_9 (Length: 310)
Name: NF17372_low_9
Description: NF17372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17372_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 53 - 295
Target Start/End: Complemental strand, 9461758 - 9461520
Alignment:
| Q |
53 |
tattctgaaacccattaagtatttggcacctcggaatttctcaataaatactattattatattcctcgaaaacaaaaagtataacgaaaatgaatttaaa |
152 |
Q |
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| T |
9461758 |
tattctgaaacccattaagtatttggcacctcggaatttctcaataaatactattat---attcctcgaaaacaaaaattgtaacgaaaatgaatttaaa |
9461662 |
T |
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| Q |
153 |
agattcaaacagtctctttattacttatgagatcaaagagatatcaagaatttaccgagcaaaattttcctaggaaaacatgggacccacatttagacat |
252 |
Q |
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| T |
9461661 |
agattcaaacggtctctttattacttatgagaccaaagagatatcaagaatttaccgagaaattttttcctagg-aaacatgagacccacatttagacat |
9461563 |
T |
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| Q |
253 |
gaccgttgcacactagccgttggaacatcaagtgcatatatct |
295 |
Q |
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| T |
9461562 |
gaccgttgcacactagccgttggaacatcaagtacatatatct |
9461520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 22191855 - 22191909
Alignment:
| Q |
125 |
caaaaagtataacgaaaatgaatttaaaagattcaaacagtctctttattactta |
179 |
Q |
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| T |
22191855 |
caaaaagtgtaacgaaaattaatttaaaagactcaaacagactttttattactta |
22191909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 10990556 - 10990617
Alignment:
| Q |
134 |
taacgaaaatgaatttaaaagattcaaacagtctctttattacttatgagatcaaagagata |
195 |
Q |
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| T |
10990556 |
taacgaagatgaatttaaaggactcaaacagactttttattacttatgggatcaaagcgata |
10990617 |
T |
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