View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17373_high_14 (Length: 326)

Name: NF17373_high_14
Description: NF17373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17373_high_14
NF17373_high_14
[»] chr7 (4 HSPs)
chr7 (1-312)||(11888201-11888508)
chr7 (42-97)||(7879718-7879773)
chr7 (42-97)||(40463956-40464011)
chr7 (42-97)||(38262196-38262251)
[»] chr4 (9 HSPs)
chr4 (36-96)||(40553931-40553991)
chr4 (40-97)||(38755906-38755963)
chr4 (41-97)||(44363129-44363185)
chr4 (42-97)||(5648338-5648393)
chr4 (42-97)||(20639658-20639713)
chr4 (43-93)||(40915912-40915962)
chr4 (40-97)||(11394932-11394989)
chr4 (40-97)||(11404659-11404716)
chr4 (42-95)||(54730334-54730387)
[»] chr6 (3 HSPs)
chr6 (42-97)||(6808475-6808530)
chr6 (42-97)||(13267805-13267860)
chr6 (42-97)||(29355855-29355910)
[»] chr8 (4 HSPs)
chr8 (39-97)||(13160781-13160839)
chr8 (42-97)||(35107311-35107366)
chr8 (42-96)||(39460994-39461048)
chr8 (43-97)||(45071344-45071398)
[»] chr2 (7 HSPs)
chr2 (41-97)||(14530400-14530456)
chr2 (42-97)||(9671259-9671314)
chr2 (42-97)||(10543780-10543835)
chr2 (42-97)||(10546243-10546298)
chr2 (41-100)||(14544143-14544202)
chr2 (43-97)||(40579750-40579804)
chr2 (44-97)||(41409942-41409995)
[»] chr1 (5 HSPs)
chr1 (41-97)||(4349741-4349797)
chr1 (42-97)||(27474383-27474438)
chr1 (53-97)||(4587574-4587618)
chr1 (37-97)||(30395721-30395781)
chr1 (53-97)||(31442400-31442444)
[»] scaffold0057 (1 HSPs)
scaffold0057 (42-97)||(46911-46966)
[»] chr5 (5 HSPs)
chr5 (42-97)||(16957394-16957449)
chr5 (42-97)||(25622540-25622595)
chr5 (42-93)||(32354211-32354262)
chr5 (42-97)||(38879663-38879718)
chr5 (53-97)||(3771419-3771463)
[»] chr3 (6 HSPs)
chr3 (42-97)||(13628790-13628845)
chr3 (42-97)||(16735542-16735597)
chr3 (42-97)||(40272812-40272867)
chr3 (42-97)||(54484793-54484848)
chr3 (43-97)||(22609867-22609921)
chr3 (41-97)||(10795422-10795478)


Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 11888508 - 11888201
Alignment:
Q  1 taatatatattacatgaaaacataattcacactgttaaattaaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtccgac 100  Q
    |||||||||||||||||||||||||||||     ||||||||||||||||  | ||||||||||||||| ||| |||||| |||| | ||||||||| ||    
T  11888508 taatatatattacatgaaaacataattca-----ttaaattaaagggcaacccagtgcactgaagctcctgcatacacagggtccagaaaggggtcccac 11888414  T
Q  101 ggttagattaatcaactaaaatgccatgaatgatatgtatggtgcaagat-acaaaccttagttaatgatattgttggaaatgatactcctacaaagaag 199  Q
     ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11888413 tgttcgattaatcaactaaaatgccatgaatgatatgtatggtgcaagattacaaaccttagttaacgatattgttggaaatgatactcctacaaagaag 11888314  T
Q  200 ccaaaaacaactccaacaatggctgctattatgagcttcattgcttcattaggttttttaatatttccactgtaggacaaaacataaatttgttatattt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11888313 ccaaaaacaactccaacaatggctgctattatgagcttcattgcttcattaggttttttaatatttccactgtaggacaaaacataaatttgttatattt 11888214  T
Q  300 gttacatgtaaat 312  Q
    |||||||| ||||    
T  11888213 gttacatgcaaat 11888201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 7879773 - 7879718
Alignment:
Q  42 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    |||||||||  ||||||||||||||||||||| || ||| ||||||||||||||||    
T  7879773 aaagggcaacccggtgcactgaagctcccgcatacgcagggtccgggaaggggtcc 7879718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 40464011 - 40463956
Alignment:
Q  42 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    ||||||||| |||||||||||||||||||||| || ||| ||||| ||||||||||    
T  40464011 aaagggcaactcggtgcactgaagctcccgcatacgcagggtccgagaaggggtcc 40463956  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 38262196 - 38262251
Alignment:
Q  42 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    |||||||||  ||||||||| ||||||||||| || |||||| |||||||||||||    
T  38262196 aaagggcaatccggtgcactaaagctcccgcatacgcagtgttcgggaaggggtcc 38262251  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 40553931 - 40553991
Alignment:
Q  36 taaattaaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtc 96  Q
    |||||||||||||||  ||||||||| ||||||||||| || ||| |||||||||||||||    
T  40553931 taaattaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtc 40553991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 38755906 - 38755963
Alignment:
Q  40 ttaaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    |||||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  38755906 ttaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 38755963  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 44363129 - 44363185
Alignment:
Q  41 taaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    ||||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  44363129 taaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 44363185  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 5648393 - 5648338
Alignment:
Q  42 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    |||||||||  | ||||||||||||||||||| || ||| ||||||||||||||||    
T  5648393 aaagggcaacccagtgcactgaagctcccgcatacgcagggtccgggaaggggtcc 5648338  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 20639658 - 20639713
Alignment:
Q  42 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  20639658 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 20639713  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 40915962 - 40915912
Alignment:
Q  43 aagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggg 93  Q
    ||||||||  ||||||||||||||||||||| || ||| ||||||||||||    
T  40915962 aagggcaatccggtgcactgaagctcccgcatacgcagggtccgggaaggg 40915912  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 11394989 - 11394932
Alignment:
Q  40 ttaaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    |||||||||||  ||||||||| ||||||||||| || ||| |||||| |||||||||    
T  11394989 ttaaagggcaacccggtgcactaaagctcccgcatacgcagggtccggaaaggggtcc 11394932  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 11404716 - 11404659
Alignment:
Q  40 ttaaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    |||||||||||  ||||||||| ||||||||||| || ||| |||||| |||||||||    
T  11404716 ttaaagggcaacccggtgcactaaagctcccgcatacgcagggtccggaaaggggtcc 11404659  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 54730387 - 54730334
Alignment:
Q  42 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggt 95  Q
    |||||| || |||||||||| ||||||||||| || ||| ||||||||||||||    
T  54730387 aaagggtaattcggtgcactaaagctcccgcatacgcagggtccgggaaggggt 54730334  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 6808530 - 6808475
Alignment:
Q  42 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    |||||||||  ||||||||| ||||||||||| |||||| ||||||||||||||||    
T  6808530 aaagggcaacccggtgcactaaagctcccgcatacacagggtccgggaaggggtcc 6808475  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 13267860 - 13267805
Alignment:
Q  42 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    |||||||||  ||||||||||||||||||||| || ||| |||| |||||||||||    
T  13267860 aaagggcaacccggtgcactgaagctcccgcatacgcagggtccaggaaggggtcc 13267805  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 29355855 - 29355910
Alignment:
Q  42 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  29355855 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 29355910  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 13160839 - 13160781
Alignment:
Q  39 attaaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    ||||||||||||  ||| ||||||||||||||||| || ||| ||||||||||||||||    
T  13160839 attaaagggcaacccggcgcactgaagctcccgcatacgcagggtccgggaaggggtcc 13160781  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 35107311 - 35107366
Alignment:
Q  42 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    |||||||||  ||||||||| ||||| ||||| |||||| ||||||||||||||||    
T  35107311 aaagggcaacccggtgcactaaagcttccgcatacacagcgtccgggaaggggtcc 35107366  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 39460994 - 39461048
Alignment:
Q  42 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtc 96  Q
    |||||||||  ||||||||| ||||||||||| || ||| |||||||||||||||    
T  39460994 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtc 39461048  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 45071398 - 45071344
Alignment:
Q  43 aagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    ||||||||  ||||||||||||||||||||| || ||  ||||||||||||||||    
T  45071398 aagggcaacccggtgcactgaagctcccgcatacgcaaggtccgggaaggggtcc 45071344  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 14530456 - 14530400
Alignment:
Q  41 taaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    ||||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  14530456 taaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 14530400  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 9671314 - 9671259
Alignment:
Q  42 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  9671314 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 9671259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 10543835 - 10543780
Alignment:
Q  42 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  10543835 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 10543780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 10546298 - 10546243
Alignment:
Q  42 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  10546298 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 10546243  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 14544202 - 14544143
Alignment:
Q  41 taaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtccgac 100  Q
    |||||||||| | |||||||| ||||||||||| || ||| |||| ||||||||||||||    
T  14544202 taaagggcaacttggtgcactaaagctcccgcatacgcagggtcccggaaggggtccgac 14544143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 40579750 - 40579804
Alignment:
Q  43 aagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    ||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  40579750 aagggcaacccggtgcactaaagctcccgcatactcagggtccgggaaggggtcc 40579804  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 41409995 - 41409942
Alignment:
Q  44 agggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    |||||||  ||||||||||||||||||||| |  ||| ||||||||||||||||    
T  41409995 agggcaacccggtgcactgaagctcccgcatatgcagggtccgggaaggggtcc 41409942  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 4349797 - 4349741
Alignment:
Q  41 taaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    ||||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  4349797 taaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 4349741  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 27474438 - 27474383
Alignment:
Q  42 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  27474438 aaagggcaatccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 27474383  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 4587574 - 4587618
Alignment:
Q  53 cggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    ||||||||||||||||||||| |  ||| ||||||||||||||||    
T  4587574 cggtgcactgaagctcccgcataggcagggtccgggaaggggtcc 4587618  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 30395721 - 30395781
Alignment:
Q  37 aaattaaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    |||| ||||||||| |||||||||| ||||||||||| |  | | ||||||||||||||||    
T  30395721 aaataaaagggcaactcggtgcactaaagctcccgcatatgcggggtccgggaaggggtcc 30395781  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 31442400 - 31442444
Alignment:
Q  53 cggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    ||||||||  |||||||| || |||||||||||||||||||||||    
T  31442400 cggtgcaccaaagctcccacatacacagtgtccgggaaggggtcc 31442444  T

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Target: scaffold0057 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 46966 - 46911
Alignment:
Q  42 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  46966 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 46911  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 16957449 - 16957394
Alignment:
Q  42 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  16957449 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 16957394  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 25622595 - 25622540
Alignment:
Q  42 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  25622595 aaagggcaatccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 25622540  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 32354262 - 32354211
Alignment:
Q  42 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggg 93  Q
    |||||||||  ||||||||| ||||||||||| |||||| ||||||||||||    
T  32354262 aaagggcaacccggtgcactaaagctcccgcatacacagggtccgggaaggg 32354211  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 38879718 - 38879663
Alignment:
Q  42 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  38879718 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 38879663  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 3771463 - 3771419
Alignment:
Q  53 cggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    ||||||||| |||||||| || |||||| ||||||||||||||||    
T  3771463 cggtgcactaaagctcccacatacacagagtccgggaaggggtcc 3771419  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 13628790 - 13628845
Alignment:
Q  42 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  13628790 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 13628845  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 16735597 - 16735542
Alignment:
Q  42 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    |||||||||  | ||||||||||||| ||||| || ||||||||||||||||||||    
T  16735597 aaagggcaacccagtgcactgaagctaccgcatacgcagtgtccgggaaggggtcc 16735542  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 40272812 - 40272867
Alignment:
Q  42 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  40272812 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 40272867  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 54484848 - 54484793
Alignment:
Q  42 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  54484848 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 54484793  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 22609921 - 22609867
Alignment:
Q  43 aagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    ||||||||  ||||||||||||||||||||| || ||  ||||||||||||||||    
T  22609921 aagggcaacccggtgcactgaagctcccgcatacgcaaggtccgggaaggggtcc 22609867  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 10795422 - 10795478
Alignment:
Q  41 taaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 97  Q
    ||||||||||   |||||||||||||||||||| || ||| |||| |||||||||||    
T  10795422 taaagggcaacctggtgcactgaagctcccgcatacgcagggtccaggaaggggtcc 10795478  T

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