View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17373_high_15 (Length: 326)
Name: NF17373_high_15
Description: NF17373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17373_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 129 - 320
Target Start/End: Complemental strand, 6293599 - 6293408
Alignment:
| Q |
129 |
tgaatattcataactaaccacaagctttctctgctccatttgaaacttgaagaaagcacaataaaaatccctgtgaaggggaaactaacaagaaaaacaa |
228 |
Q |
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| T |
6293599 |
tgaatattcataactaaccacaagctttctctgctccatttgaaacttgaagaaagcacaataaaaatccctgtgaaggggaaattaacaagaaaaacaa |
6293500 |
T |
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| Q |
229 |
aaattctatccaattccacctcgttctcacaccactctctctaaaattctcacactttctccctgcacataacaagcacactttcttctcac |
320 |
Q |
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| T |
6293499 |
aaattctatccaattccacctcgttctcacaccactctctataaaattctcacactttctccctgcacataacaagcacacttttttctcac |
6293408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 6293711 - 6293645
Alignment:
| Q |
17 |
aatccccaaaacctaatatccaatttcataaacacaaatcaaaacatatcaacattttaatcattgc |
83 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6293711 |
aatccccaaaacctaatatccaatttcataaacacaaatcaaaacatatcaacattttaatcattgc |
6293645 |
T |
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