View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17373_high_16 (Length: 317)
Name: NF17373_high_16
Description: NF17373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17373_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 27441963 - 27442261
Alignment:
| Q |
1 |
tactaagcatcttatgagcatcaaaataatattcagggaaaatcatcaaaatgaattccttgcagtattatgcactaactggtatcataaaataagtcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27441963 |
tactaagcatcttatgagcatcaaaataatattcagggaaaatcatcaaaatgaattccttgcagtattatgcactaactggtatcataaaataagtcct |
27442062 |
T |
|
| Q |
101 |
tgactacttcttattcttccaagcacctaatattcctgaatggtatcctctaatatgctgctcattccttcaaggttcttccacttactcatttcttcag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27442063 |
tgactacttcttattcttccaagcacctaattttcctgaatggtatcctctaatatgctgctcattccttcaaggttcttccacttgctcatttcttcag |
27442162 |
T |
|
| Q |
201 |
gtaaactcataggcaagtccataccatgcatgtcatcggcatcaggttcagccggcttccaaatctcaacaagaggtgctagcacatggactacgtatc |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27442163 |
gtaaactcataggcaagtccataccatgcatgtcatcggcatcaggttcagccggcttccaaatctcaacaagaggtgctagcacatggactacgtatc |
27442261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 159 - 299
Target Start/End: Original strand, 11855511 - 11855651
Alignment:
| Q |
159 |
tgctcattccttcaaggttcttccacttactcatttcttcaggtaaactcataggcaagtccataccatgcatgtcatcggcatcaggttcagccggctt |
258 |
Q |
| |
|
|||||||||||||||| |||| | |||||||| | ||| ||| |||| |||| |||||| || |||| ||||||||| |||| ||||||||||||||| |
|
|
| T |
11855511 |
tgctcattccttcaagattctgcaacttactcggtgcttgaggcaaacccatatacaagtcaatcccatacatgtcatcagcattaggttcagccggctt |
11855610 |
T |
|
| Q |
259 |
ccaaatctcaacaagaggtgctagcacatggactacgtatc |
299 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
11855611 |
ccaaatctcaacaagaggtgctaacacattcactacgtatc |
11855651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 159 - 287
Target Start/End: Complemental strand, 11851011 - 11850883
Alignment:
| Q |
159 |
tgctcattccttcaaggttcttccacttactcatttcttcaggtaaactcataggcaagtccataccatgcatgtcatcggcatcaggttcagccggctt |
258 |
Q |
| |
|
||||| |||||||||| ||| ||||||||| | | ||| ||| ||||| ||| |||||| || |||| ||||||||| || ||||||||||||||||| |
|
|
| T |
11851011 |
tgctcgttccttcaagattcggccacttactaagtccttgaggaaaacttatatccaagtcaatcccatacatgtcatcagcttcaggttcagccggctt |
11850912 |
T |
|
| Q |
259 |
ccaaatctcaacaagaggtgctagcacat |
287 |
Q |
| |
|
||||||||| ||||||||||||||||||| |
|
|
| T |
11850911 |
ccaaatctcgacaagaggtgctagcacat |
11850883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 159 - 296
Target Start/End: Complemental strand, 11838328 - 11838191
Alignment:
| Q |
159 |
tgctcattccttcaaggttcttccacttactcatttcttcaggtaaactcataggcaagtccataccatgcatgtcatcggcatcaggttcagccggctt |
258 |
Q |
| |
|
|||||||||||||| | |||| ||||||| ||| | ||| ||| ||||||||| |||||| || |||| || ||||| ||||||||||||||||||| |
|
|
| T |
11838328 |
tgctcattccttcatgattctgccacttaatcagtgcttgaggcaaactcatatccaagtcaatcccatatatatcatcaacatcaggttcagccggctt |
11838229 |
T |
|
| Q |
259 |
ccaaatctcaacaagaggtgctagcacatggactacgt |
296 |
Q |
| |
|
||||||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
11838228 |
ccaaatctcgacaaggggtgctagcacattcactacgt |
11838191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University