View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17373_high_17 (Length: 316)
Name: NF17373_high_17
Description: NF17373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17373_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 20 - 302
Target Start/End: Original strand, 30297013 - 30297295
Alignment:
| Q |
20 |
tcgagaaccaaaatttaacttcagtcaaaatataaggaagaaaaagctccatttgtaacttgttatcttctggtgataatcgactacactgatcatctaa |
119 |
Q |
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| T |
30297013 |
tcgagaaccaaaatttaacttcagtcaaaatataaggaagaaaaagctccatttgtaacttgttatcttctggtgataatcgaccacactgatcatctaa |
30297112 |
T |
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| Q |
120 |
tgtgacaataatttgttcaatcgtaattatgtttttcttttcttggttctctcgtaataatactagcattctctatatttacttaaatagtaattcatag |
219 |
Q |
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| T |
30297113 |
tgtgacaataatttgttcaatcgtaattatgtttttcttttcttggttctctcgtaataatactagcattctctatatttacttaaatagtaattcatag |
30297212 |
T |
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| Q |
220 |
gcaagatggaaaatccaatcattggtactgagttatgaggattgaagacaaatttttaaagctgccccctcatccagaataat |
302 |
Q |
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| T |
30297213 |
gcaagatggaaaatccaatcattggtactgagttatgaggattgaagacaaatttttaaagctgccccctcatccaaaataat |
30297295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 208
Target Start/End: Original strand, 30289513 - 30289709
Alignment:
| Q |
22 |
gagaaccaaaatttaacttcagtcaaa-atataaggaagaaaaagctccatttgtaact----tgttatcttctggtgataatcgactaca---ctgatc |
113 |
Q |
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| T |
30289513 |
gagaactaaaataaaacttcagtcaaatatataaggaagaaaaaactccatttggaactcatttgttattttctggtgataatctaccacagcactgatc |
30289612 |
T |
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| Q |
114 |
atctaatgtgacaataatttgttcaatcgtaattatg----tttttcttttcttggttctctcgtaataatactagcattctctatatttacttaaata |
208 |
Q |
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| T |
30289613 |
atctaatgtcacaataatttggtcgatcgtaattatgtttttttttcttttcttggt--tctcataataatgctagcattctctgtagttacttgaata |
30289709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 30302292 - 30302350
Alignment:
| Q |
105 |
acactgatcatctaatgtgacaataatttgttcaatcgtaattatgtttttcttttctt |
163 |
Q |
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| T |
30302292 |
acactcatcagctaatgttacaataatttgttcgatcgtaattatgttttctttttctt |
30302350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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