View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17373_high_21 (Length: 234)
Name: NF17373_high_21
Description: NF17373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17373_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 33413333 - 33413533
Alignment:
| Q |
19 |
acattgtacctaggaccaactactcattgaaccttggagctgctgcaagtgtttgtggtgtcatcaacggatcaatgactattgcacatgtttttgcttc |
118 |
Q |
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| T |
33413333 |
acattgtacctaagaccaactactcattgaaccttggagctgctgcaagtgtttgtggtgtcatcaacggatcaatgactattgcacatgtttttgcttc |
33413432 |
T |
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| Q |
119 |
tatttattttagtgtgtgatcgaactgattgtgtctaagacctatcatattcagtgccattgttcttctaattgtaaacatgatgtatgcaatggcctat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33413433 |
tatttattttagtgtgtgatcgaactgattgtgtctaagacctatcatattcagtgccattgttcttctaattgtaaacatgatgtatgcaatggcctat |
33413532 |
T |
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| Q |
219 |
g |
219 |
Q |
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| |
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| T |
33413533 |
g |
33413533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 33420476 - 33420677
Alignment:
| Q |
20 |
cattgtacctaggacc---aactactcattgaaccttggagctgctgcaagtgtttgtggtgtcatcaacggatcaatgactattgcacatgtttttgct |
116 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||| ||||||||| |
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| T |
33420476 |
cattgtacctatgaccggaaactactcattgaaccttggagctgctgcaagtgtttgtggtgttgtcgtcggatcaatggctattgcacaagtttttgct |
33420575 |
T |
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| Q |
117 |
tctatttattttagtgtgtgatcgaactgattgtgtctaagacctatcatattcagtgccattgttcttctaattgtaaacatgatgtatgcaatggcct |
216 |
Q |
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||| ||||||| ||| |||| |||||| ||| ||||||||||| |||||||||||||| ||||||| ||||||||||||||| | |||||||||||||| |
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| T |
33420576 |
tctgtttatttcagtatgtggtcgaaccgatcgtgtctaagacttatcatattcagtgttattgttcatctaattgtaaacatcaagtatgcaatggcct |
33420675 |
T |
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| Q |
217 |
at |
218 |
Q |
| |
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|| |
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| T |
33420676 |
at |
33420677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 39 - 219
Target Start/End: Complemental strand, 28812188 - 28812008
Alignment:
| Q |
39 |
tactcattgaaccttggagctgctgcaagtgtttgtggtgtcatcaacggatcaatgactattgcacatgtttttgcttctatttattttagtgtgtgat |
138 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||| || ||||||| |||||||||||| ||||||| |||| ||| | |
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| T |
28812188 |
tactcattgaaccttggagctgctgcaagtgtttgcggtgtcgtcatcggatcaatggctgttgcacaggtttttgcttctgtttatttcagtgcgtggt |
28812089 |
T |
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| Q |
139 |
cgaactgattgtgtctaagacctatcatattcagtgccattgttcttctaattgtaaacatgatgtatgcaatggcctatg |
219 |
Q |
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| T |
28812088 |
cgaaccgatcgtatctaagacctctcatattcagtaccattgttcttatgattggaaacatcatgtatgcattggcctatg |
28812008 |
T |
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