View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17373_high_24 (Length: 227)
Name: NF17373_high_24
Description: NF17373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17373_high_24 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 12085979 - 12085764
Alignment:
| Q |
1 |
tcaacttaatagcatccacatcatcttcttgagatccatagattatcttctctgattctatattaacagccgcagcctgacatcattgaccaactcaaga |
100 |
Q |
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| T |
12085979 |
tcaacttaatagcacccacatcatcttcttgagatccatagattatcttctctgattctatattaacagccgcagcctgacatcattgactaactcaaga |
12085880 |
T |
|
| Q |
101 |
aaaggatctacctgtgaatttccaactgttgtgtccaagtgtgagttgtatgttaaaagactttataaatgagaagaccgggagcatgtaggattccaag |
200 |
Q |
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| T |
12085879 |
aaaggatctacctgtgaatttccaactgttgtgtccaagtgtgagttgtatgtt-aaacactttataaatgagaagaccgggagcatgtaggattccaag |
12085781 |
T |
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| Q |
201 |
gtaaaaagagacctatg |
217 |
Q |
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||||||||||||||||| |
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| T |
12085780 |
gtaaaaagagacctatg |
12085764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 25302586 - 25302705
Alignment:
| Q |
4 |
acttaatagcatccacatcatcttcttgagatccatagattatcttctctgattctatattaacagcc-gcagcctgacatcattgaccaactcaagaaa |
102 |
Q |
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||||||||||| | |||||||||||||| |||||||| |||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||| |
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| T |
25302586 |
acttaatagcagcaacatcatcttcttgtgatccatatattatcttctctgattctatattaacagcctgtagcctgacatcatcgaccaactcaagaaa |
25302685 |
T |
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| Q |
103 |
aggatctacctgtgaatttc |
122 |
Q |
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| T |
25302686 |
aggatctacctgtggatttc |
25302705 |
T |
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