View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17373_high_5 (Length: 483)
Name: NF17373_high_5
Description: NF17373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17373_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Original strand, 34539492 - 34539975
Alignment:
| Q |
1 |
taccagctttccactttcggagaaccatttactgaacaaagaatgtgcattcacttcaacaagctgagcctgtgggaatctgagtgggaaaaaatggtag |
100 |
Q |
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| T |
34539492 |
taccagctttccgctttcggagaaccatttactgaacaaagaatgtgcattcacttcaacaagctgagcctgtgggaatctgagtgggaaaaaatggtag |
34539591 |
T |
|
| Q |
101 |
gtaaatttgtactcccttcatttacttgtt--caatgataaatatgattaagagtataaataatagatcaattcaccttgaattgaatcgaattgacagt |
198 |
Q |
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| T |
34539592 |
gtaaatttgtactcccttcatttacttgttttcaatgataaatatgattaagagtataaataatagatcaatttaccttgaattgaatcgaattgacagt |
34539691 |
T |
|
| Q |
199 |
ttctgagctaatgctttacataaagacgtctttccagtcccagggggtccatgcaaaagaattatgctgcaaataatgacaaatcctaaaattatcaaga |
298 |
Q |
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| T |
34539692 |
ttctgagctaatgctttacataaagacgtctttccagtcccagggggtccatgcaaaagaattatgctgcaaataatgacaaatcctaaaattatcaaga |
34539791 |
T |
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| Q |
299 |
tatgcgcataggtaaatcatctcat----------ctcactcatgttcgactatcattttatataaatgcataatatatgtaaagatacaatatttttca |
388 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34539792 |
tatgcgaataggtaaatcatctcatctcactcatgctcactcatgttcgactatcattttatataaatgcataatatatgtaaagatacaatgtttttca |
34539891 |
T |
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| Q |
389 |
ggaacatataatcatcagtaagttgtgatcacaacatataaggcaatacaaaaataaaaacatatctctaggactcacaggttc |
472 |
Q |
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| T |
34539892 |
ggaacatataatcatcagtaagttgtggtcacaacatataaggcaatacaaaaataaatacatatctctagtactcaccggttc |
34539975 |
T |
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