View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17373_high_7 (Length: 424)
Name: NF17373_high_7
Description: NF17373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17373_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 4 - 408
Target Start/End: Original strand, 48633257 - 48633663
Alignment:
| Q |
4 |
gggtagataatacttagtggttatcatatcttgaaatataattttaactagattgatgaaaatcccattattgactttataaattaattgcccatgattg |
103 |
Q |
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| T |
48633257 |
gggttgatactacttagtggttatcatatcttgaaatataattttaactagattgatgaaaatcccattattgactttataaattaattgcccatgattg |
48633356 |
T |
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| Q |
104 |
cctaattttcctttcaacaatgttgttactttatatatagtgatcctaagaccctatatagagtaactaattatacatcaaaagtttggaatataagtat |
203 |
Q |
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| T |
48633357 |
cctaattttcctttcaacaatgttgttactttatatatagtgatcctaagaccctatatagagtaactaattatacatcaaaagtttggaatataagtat |
48633456 |
T |
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| Q |
204 |
attaattaatgcttttggatttggtggatgtagatgtgaattggtgaaaaaactagatatcgcacacgctatttacatgatt--aatcagtgcaaataag |
301 |
Q |
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| T |
48633457 |
attaattaatgcttttggatttggtggatgtagatgtgaattggtgaaaaaactagatatcgcaaacgctatttacatgattaaaatcattgcaaataag |
48633556 |
T |
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| Q |
302 |
cacgtcgaaagacatttctaatttgatctttatatttcacgcttctcacattaatgattagtttggggcattggttttattattatttaatttgatttga |
401 |
Q |
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| T |
48633557 |
cacgtcgaaagacatttctaatttgatctttacatttcacgcttctcacattaatgattagtttggggcattggttttattattatttgatttgatttga |
48633656 |
T |
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| Q |
402 |
tgaatgt |
408 |
Q |
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| T |
48633657 |
tgaatgt |
48633663 |
T |
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