View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17373_low_12 (Length: 381)
Name: NF17373_low_12
Description: NF17373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17373_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 384781 - 384409
Alignment:
| Q |
1 |
cgttgtcgacaacaacaattatgagcaggatcgtcttctgggtgatattcagaaatataatcgtctttttggtgaacaatctaatgctagtattgctgag |
100 |
Q |
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| T |
384781 |
cgttgtcgacaacaacaattatgagcaggatagtcttctgggtgatattcagaaatataatcgtctttttggtgaacaatctaatgctagtattgctgag |
384682 |
T |
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| Q |
101 |
agattacgtgatcttccgtttcttttaagaaggctttttagggattttgctaaccctaatgtgtcttttcctcttgttatcagagctcgtatttttgtta |
200 |
Q |
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| T |
384681 |
agattacgtgatcttccgtttcttttaagaaggctttttagggattttgctaaccctaatgtgtcttttcctcttgttatcagagctcgtatttttgtta |
384582 |
T |
|
| Q |
201 |
cggttagttcttcataactcctcaattannnnnnnactttgttgttgttgttgatgtttatattcaaattatcattaggtagttgtgaatcgtgtcgggt |
300 |
Q |
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| T |
384581 |
cagttagttcttcataactcctcaactatttttttactttgttgttgttgttgatgtttatattcaaattatcattaggtagttgtgaatcgtgtcggat |
384482 |
T |
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| Q |
301 |
tggagatcattagtcagaatgttggaggtgacttcgaaccgttgttcctatgatcaatagcttccttcatctc |
373 |
Q |
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| T |
384481 |
tggagatcattagtcggaatgttggaggtgacttcgaaccgttgttcctatgatcaatagcttccttcttctc |
384409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 43 - 212
Target Start/End: Complemental strand, 390116 - 389947
Alignment:
| Q |
43 |
tgatattcagaaatataatcgtctttttggtgaacaatctaatgctagtattgctgagagattacgtgatcttccgtttcttttaagaaggctttttagg |
142 |
Q |
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| T |
390116 |
tgatattcaaagatataaccgtgtttttggccaacaatctaatgctagtattgttcagagattacgtgatcttccttttcttttgaaaaggctttttaag |
390017 |
T |
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| Q |
143 |
gattttgctaaccctaatgtgtcttttcctcttgttatcagagctcgtatttttgttacggttagttctt |
212 |
Q |
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| T |
390016 |
gattttgttaaccctaatacttctcttcctcttgttattagagctcgtgttttcattacggttagttctt |
389947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 389908 - 389857
Alignment:
| Q |
239 |
ttgttgttgttgttgatgtttatattcaaatt--atcattaggtagttgtga |
288 |
Q |
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| T |
389908 |
ttgttgttgttgttgttgtttatgttcaaattaaatcattaggtagtcgtga |
389857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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