View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17373_low_13 (Length: 364)
Name: NF17373_low_13
Description: NF17373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17373_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 347
Target Start/End: Complemental strand, 2034671 - 2034342
Alignment:
| Q |
18 |
gttataagctacaattgaagcaaacaaataattagttatatgcttacgtcatctattgatacttccaactaaaatcttaaaatccaaaccagagattaaa |
117 |
Q |
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| T |
2034671 |
gttataagctacaattgaagcaaacaaataattagttatatgcttacgttatctattgatacttctaactaaaatcttaaaatccaaaccagagattaaa |
2034572 |
T |
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| Q |
118 |
gacatcaattcctatcagtttgagggatatagcttacttggaactagtcaaatagtaaagtaagcaataataaaaggcacgcaatacataacacctcaaa |
217 |
Q |
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| T |
2034571 |
gacaccaattcctatcagtttgagggatatagcttacttggaactagtcaaatagtaaagtaagcaataataaaaggcacgcaatacataacacctcaaa |
2034472 |
T |
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| Q |
218 |
taagatggattatggaatataacgccggctatatgcttgaaaccaagttgaaaatgcaagagatttgataaactagtctaactctaaatatacatcaaat |
317 |
Q |
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| T |
2034471 |
taagatggattatggaatataacgccggctatatgcttgaaaccaagttgaaaatgcaagagatttgataaactagtctaactctaaatatacatcaaat |
2034372 |
T |
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| Q |
318 |
ggcttaatgtgttctattttattacctttg |
347 |
Q |
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| T |
2034371 |
ggcttaatgtgttctattttattacctttg |
2034342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 2029753 - 2029698
Alignment:
| Q |
18 |
gttataagctacaattgaagcaaacaaataattagttatatgcttacgtcatctat |
73 |
Q |
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| T |
2029753 |
gttataagctacaaggtaaacaaacaaataattagttatatgcttacatcttctat |
2029698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 2051883 - 2051805
Alignment:
| Q |
21 |
ataagctacaattgaagcaaacaaataattagttatatgcttacgtcatctattgatacttccaactaaaatcttaaaa |
99 |
Q |
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| T |
2051883 |
ataagctacaattcaaacaaacaaataattagttgtatgtttacatctattatcgatccttccaattaatatcttaaaa |
2051805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 2058651 - 2058618
Alignment:
| Q |
245 |
gctatatgcttgaaaccaagttgaaaatgcaaga |
278 |
Q |
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| T |
2058651 |
gctatatgcttgaaaccaagttaaaaatgcaaga |
2058618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 285
Target Start/End: Complemental strand, 2051187 - 2051147
Alignment:
| Q |
245 |
gctatatgcttgaaaccaagttgaaaatgcaagagatttga |
285 |
Q |
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| T |
2051187 |
gctatatgcttgaagccaagttgaaaatgcaggagacttga |
2051147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 254 - 321
Target Start/End: Original strand, 17183007 - 17183074
Alignment:
| Q |
254 |
ttgaaaccaagttgaaaatgcaagagatttgataaactagtctaactctaaatatacatcaaatggct |
321 |
Q |
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| T |
17183007 |
ttgaaaccaagttgaaaatgcaagagatttgattaactagtctaactctaaatatacatcaaatggct |
17183074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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