View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17373_low_15 (Length: 339)
Name: NF17373_low_15
Description: NF17373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17373_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 326
Target Start/End: Complemental strand, 18152814 - 18152503
Alignment:
| Q |
15 |
tgtggatgatccagaatcttttcgaatgctagttcgagaaataagatcttggggtcaggaactgaagcgattcattgaatttgagaaagaattgcagaat |
114 |
Q |
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|||||||| |||||||||||||||| |||| ||||||||| || |||||| || || ||||||||| | ||| ||| || ||||||||| || |||| | |
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| T |
18152814 |
tgtggatgctccagaatcttttcgattgctcgttcgagaactacgatctttggctctggaactgaatcatttccttgtatctgagaaagacttccagatt |
18152715 |
T |
|
| Q |
115 |
aaaaggaaggtagattaattggactgaatcagaaattttattctatgattgatcagtataaacatcaacaccttcgaattggatcagtatctcctgaaca |
214 |
Q |
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| T |
18152714 |
caaaggaaggaagtttaattggactgaatcagaaattttattctatgattgatcagtataaacatcaacaccttcgaattggatcagtttctcctgaaca |
18152615 |
T |
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| Q |
215 |
aataagtgcttgggcnnnnnnnntcctacctaatggagaaattgttggagaggtaacaaaaccctatactcttcattacaaaaccaataagcccgaaaaa |
314 |
Q |
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| T |
18152614 |
aataagtgcttgggcaaaaaaaatcctacctaatggagaaattgttggagaggtaacaaaaccctatactcttcattacaaaaccaataagcctgaaaaa |
18152515 |
T |
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| Q |
315 |
gatggattattt |
326 |
Q |
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|||||||||||| |
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| T |
18152514 |
gatggattattt |
18152503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 129 - 326
Target Start/End: Original strand, 1786036 - 1786234
Alignment:
| Q |
129 |
ttaattggactgaatcagaaattttattctatgattgatcagtataaacatcaacaccttcgaattggatcagtatctcctgaacaaataagtgcttggg |
228 |
Q |
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| T |
1786036 |
ttaattggacttaatcataagttttattctatgactgatcagtataaacatcaacaccttcgaattggatcaatttttcctagacaattaagtgcttgag |
1786135 |
T |
|
| Q |
229 |
cnnnnnnnnt-cctacctaatggagaaattgttggagaggtaacaaaaccctatactcttcattacaaaaccaataagcccgaaaaagatggattattt |
326 |
Q |
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| T |
1786136 |
caaaagaaaaacctacataatggagaaattgttggggaggtaacaaaaccctttacttttcattacaataccaataagtctgaaaaagatggattattt |
1786234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 49 - 326
Target Start/End: Original strand, 28371607 - 28371884
Alignment:
| Q |
49 |
cgagaaataagatcttggggtcaggaactgaagcgattcattgaatttgagaaagaattgcagaataaaaggaaggtagattaattggactgaatcagaa |
148 |
Q |
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| T |
28371607 |
cgagaactacgatctttggctctggaactgaatcatttccttgtatctgagaaagacttccagattcaaaggaaggaagtttaattggactgaatcagaa |
28371706 |
T |
|
| Q |
149 |
attttattctatgattgatcagtataaacatcaacaccttcgaattggatcagtatctcctgaacaaataagtgcttgggcnnnnnnnntcctacctaat |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
28371707 |
attttattctatgattgatcagtataaacatcaacaccttcgaattggatcagtttctcctgaacaaataagtgcttgggcaaaaaaaatcctacctaat |
28371806 |
T |
|
| Q |
249 |
ggagaaattgttggagaggtaacaaaaccctatactcttcattacaaaaccaataagcccgaaaaagatggattattt |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28371807 |
ggagaaattgttggagaggtaacaaaaccctatactcttcattacaaaaccaataagcctgaaaaagatggattattt |
28371884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 49 - 326
Target Start/End: Original strand, 28379429 - 28379706
Alignment:
| Q |
49 |
cgagaaataagatcttggggtcaggaactgaagcgattcattgaatttgagaaagaattgcagaataaaaggaaggtagattaattggactgaatcagaa |
148 |
Q |
| |
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|||||| || |||||| || || ||||||||| | ||| ||| || ||||||||| || |||| | ||||||||| || |||||||||||||||||||| |
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| T |
28379429 |
cgagaactacgatctttggctctggaactgaatcatttccttgtatctgagaaagacttccagattcaaaggaaggaagtttaattggactgaatcagaa |
28379528 |
T |
|
| Q |
149 |
attttattctatgattgatcagtataaacatcaacaccttcgaattggatcagtatctcctgaacaaataagtgcttgggcnnnnnnnntcctacctaat |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
28379529 |
attttattctatgattgatcagtataaacatcaacaccttcgaattggatcagtttctcctgaacaaataagtgcttgggcaaaaaaaatcctacctaat |
28379628 |
T |
|
| Q |
249 |
ggagaaattgttggagaggtaacaaaaccctatactcttcattacaaaaccaataagcccgaaaaagatggattattt |
326 |
Q |
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| T |
28379629 |
ggagaaattgttggagaggtaacaaaaccctatactcttcattacaaaaccaataagcctgaaaaagatggattattt |
28379706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 116 - 305
Target Start/End: Complemental strand, 23937003 - 23936815
Alignment:
| Q |
116 |
aaaggaaggtagattaattggactgaatcagaaattttattctatgattgatcagtataaacatcaacaccttcgaattggatcagtatctcctgaacaa |
215 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| | ||||||||| || |
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| T |
23937003 |
aaaggaaggaagtttaattggactgaatcagaaattttattctatgattgatcagtataaagatcaacaccttcgagttggatcaatttctcctgaataa |
23936904 |
T |
|
| Q |
216 |
ataagtgcttgggcnnnnnnnntcctacctaatggagaaattgttggagaggtaacaaaaccctatactcttcattacaaaaccaataag |
305 |
Q |
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||||||| |||||| |||| ||||||||||||||||||||| |||| |||||||| |||||||||| |||||||||||||||| |
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| T |
23936903 |
ataagtgattgggc-aaataaatcctccctaatggagaaattgttggacaggtgacaaaaccttatactcttcgttacaaaaccaataag |
23936815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 252 - 326
Target Start/End: Complemental strand, 6532213 - 6532139
Alignment:
| Q |
252 |
gaaattgttggagaggtaacaaaaccctatactcttcattacaaaaccaataagcccgaaaaagatggattattt |
326 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||| |
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| T |
6532213 |
gaaattgttggcaaggtaacaaaaccctatactcttcattacaaaacaaatatgcctgaaaaagatggattattt |
6532139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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