View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17373_low_16 (Length: 327)
Name: NF17373_low_16
Description: NF17373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17373_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 317
Target Start/End: Complemental strand, 5261482 - 5261191
Alignment:
| Q |
19 |
aactatttgttcttattgtgttgttaacaagagggtgttcttgagtaattccattttgtcgttacaacatgatataataaagttctttggggttgataac |
118 |
Q |
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| T |
5261482 |
aactatttgttcttattgtgttgttaacaagagggtgttcttgagtaattccattttgtcgttacaacatgatataataaagttctttggggttgataac |
5261383 |
T |
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| Q |
119 |
attctgcactggcataataaagtaaataaatgtactttgtgatgattttggctactgcatag--ctctattgataatagcctcaaacagtggttgcctgc |
216 |
Q |
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| T |
5261382 |
attctgcactggcataataaaataaataaatgtactt----gtgattttggctactgcatagctctctattgat-atagcctcaaacagtggttgcctgc |
5261288 |
T |
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| Q |
217 |
aagaatttcctcaatttgctatgctagattgttacatgccaaatatagatcatcatttaattttatgttttgcatagcatcaaacttctaccgagccttt |
316 |
Q |
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| T |
5261287 |
aagaatttcctcaattttccatgctagattgttacatgccaaatatagatcatcattttat----tgttttgcatagcatcaaacttctaccgagccttt |
5261192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 266
Target Start/End: Complemental strand, 5246763 - 5246701
Alignment:
| Q |
207 |
ggttgcctgcaagaatttcctcaatttgctatgctagat---tgttacatgccaaatatagat |
266 |
Q |
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| T |
5246763 |
ggtttcctgccagaatttcctcaatttgctctgctagattcatgttatatgccaaatatagat |
5246701 |
T |
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