View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17373_low_2 (Length: 628)
Name: NF17373_low_2
Description: NF17373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17373_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 236 - 610
Target Start/End: Original strand, 6447679 - 6448058
Alignment:
| Q |
236 |
gatgttgcatcaaataacaaaatatcttttttaaaaacaaagggagtttt-ttgaccttacggttcactcattagggcattattatcccatgattaatct |
334 |
Q |
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| T |
6447679 |
gatgttgcatcaaataacaaaatatcttttt-aaaaacaaagggagtttttttgaccttacggttcactcattagggcattattatcccatgattaatct |
6447777 |
T |
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| Q |
335 |
tgaatgacgatttggcatttgccacaaataaggtcttgctacctaaaagctgccatacttttacaaaaggactaattaagcatgtttagaggtttggtta |
434 |
Q |
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| T |
6447778 |
tgaatgacgatttgccatttgccacaaataaggtcttgctacctaaaagctgccatacttttacaaaaggactaattaagcatgtttagaggtttggtta |
6447877 |
T |
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| Q |
435 |
tttgaaccaacaataccaactccttgctacatatagagatttcttaattaactattgattagagtaatgtattgtggacc-----atgtaaagtaatgtc |
529 |
Q |
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| T |
6447878 |
tttgaaccaacaataccaactccttgctacatatagagatttcttaattaactattgattagagtaatgtattgtggaccatgtaatgtaatgtaatgtc |
6447977 |
T |
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| Q |
530 |
gtggagcacatcagcctaaacggcgttaatttcggtgattccttgctttcttttttgtcgtttatttgatactcaaagtgt |
610 |
Q |
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| T |
6447978 |
gtggagcacatcagcctaaacggcgttaatttcggtgattccttgctttcttttttgtcgtttatttgatactcaaagtgt |
6448058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 6447524 - 6447667
Alignment:
| Q |
14 |
ataattcttacttaagttgcatgtaagttacttagagagatcactatcttttgaaagagaaatgataccttaacatcaaagtttcgatatgtcaaatata |
113 |
Q |
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| T |
6447524 |
ataattcttacttaagttgcatgtaagttacctagagagatcactatcttttgaaagagaaatgataccttaacatcaaagtttcgatatatcaaatatg |
6447623 |
T |
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| Q |
114 |
tttattgtcatttggttcttaaatgtaattttaaaatgcgtgta |
157 |
Q |
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| T |
6447624 |
tttattgtcatttggttcttacatgtaattttaaaatgcgtgta |
6447667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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