View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17373_low_27 (Length: 231)

Name: NF17373_low_27
Description: NF17373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17373_low_27
NF17373_low_27
[»] chr3 (12 HSPs)
chr3 (9-216)||(27206471-27206680)
chr3 (1-213)||(31093727-31093939)
chr3 (1-213)||(13002927-13003139)
chr3 (1-213)||(31252447-31252659)
chr3 (1-213)||(16163137-16163349)
chr3 (138-197)||(27229150-27229209)
chr3 (4-102)||(25658664-25658762)
chr3 (4-102)||(25665069-25665167)
chr3 (4-102)||(25671474-25671572)
chr3 (4-102)||(25677879-25677977)
chr3 (4-102)||(25684555-25684653)
chr3 (10-80)||(27229267-27229337)
[»] scaffold0029 (2 HSPs)
scaffold0029 (7-102)||(18364-18459)
scaffold0029 (7-102)||(43376-43471)
[»] chr2 (2 HSPs)
chr2 (7-102)||(33120609-33120704)
chr2 (7-102)||(33130352-33130447)


Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 9 - 216
Target Start/End: Complemental strand, 27206680 - 27206471
Alignment:
Q  9 ccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtctttatgg 108  Q
    |||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27206680 ccatattgttctggtgcttggtataaacgtttgacatcattgtaaacgtcaaagtatactatcttagcttgagggtgtttatgccttagtgtctttatgg 27206581  T
Q  109 a--nnnnnnnnnnnnnnnattgaagtattttatgaaagagttgtatgctatcaaacatccaaatttatcatagtcttctttcttctgactaattttattt 206  Q
    |                 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27206580 attttttaagttttttttattaaagtattttatgaaagagttgtatgctatcaaacatccaaatttatcatagtcttctttcttctgactaatcttattt 27206481  T
Q  207 gacaataagt 216  Q
    ||||||||||    
T  27206480 gacaataagt 27206471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 31093727 - 31093939
Alignment:
Q  1 tccacacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgt 100  Q
    ||||| |||||||||||||||||||||| |||||| ||||| |||| |||||| ||||||| |||||||||||||||||||| ||||| ||  ||| | |    
T  31093727 tccacgcaccatattgttgtggtgcttgatataaacgtttggcatcgttgtaatagtcaaaatatactatcttagcttgagggtgtttctgttttattat 31093826  T
Q  101 ctttatggannnnnnnnnnnnnnnattgaagtattttatgaaagagttgtatgctatcaaacatccaaatttatcatagtcttctttcttctgactaatt 200  Q
    || ||||||               ||| |||||||  ||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||     
T  31093827 ctctatggatttttttagctgctcattaaagtattcgatgaaagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttctgactaatc 31093926  T
Q  201 ttatttgacaata 213  Q
    || ||||||||||    
T  31093927 ttttttgacaata 31093939  T

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Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 13002927 - 13003139
Alignment:
Q  1 tccacacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgt 100  Q
    |||||||||||||||||||||||| ||| |||||| | ||| |||| |||||| | ||||| |||||||||||||||||||| ||||| ||  ||| |||    
T  13002927 tccacacaccatattgttgtggtgtttgatataaacgcttggcatcgttgtaataatcaaaatatactatcttagcttgagggtgtttctgttttattgt 13003026  T
Q  101 ctttatggannnnnnnnnnnnnnnattgaagtattttatgaaagagttgtatgctatcaaacatccaaatttatcatagtcttctttcttctgactaatt 200  Q
    || ||||||               ||| |||||||  |||| || |||||| ||||||||||||||||||| |||||||||||||||||||||||||||     
T  13003027 ctctatggatttttttagctgctcattaaagtattcaatgagagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttctgactaatc 13003126  T
Q  201 ttatttgacaata 213  Q
    || ||||||||||    
T  13003127 ttttttgacaata 13003139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 31252659 - 31252447
Alignment:
Q  1 tccacacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgt 100  Q
    ||||||||||||| ||||| |||| ||| |||||| | ||| |||| |||||| | ||||| |||||||||||||||||||| ||||| ||  ||| |||    
T  31252659 tccacacaccatactgttgaggtgtttgatataaacgcttggcatcgttgtaataatcaaaatatactatcttagcttgagggtgtttctgttttattgt 31252560  T
Q  101 ctttatggannnnnnnnnnnnnnnattgaagtattttatgaaagagttgtatgctatcaaacatccaaatttatcatagtcttctttcttctgactaatt 200  Q
    || ||||||               ||| |||||||  |||| || |||||| ||||||||||||||||||| |||||||||||||||||||||||||||     
T  31252559 ctctatggatttttttagctgctcattaaagtattcaatgagagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttctgactaatc 31252460  T
Q  201 ttatttgacaata 213  Q
    || ||||||||||    
T  31252459 ttttttgacaata 31252447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 16163349 - 16163137
Alignment:
Q  1 tccacacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgt 100  Q
    |||||| ||||||||||||||||||||  |||||| ||||| |||| |||||  ||||||| |||| ||||||||||||||||||||| |||| || |||    
T  16163349 tccacagaccatattgttgtggtgcttcatataaacgtttggcatcgttgtagtagtcaaaatatattatcttagcttgaggatgtttctgccgtaatgt 16163250  T
Q  101 ctttatggannnnnnnnnnnnnnnattgaagtattttatgaaagagttgtatgctatcaaacatccaaatttatcatagtcttctttcttctgactaatt 200  Q
    || ||||||               ||| |||||||  |||||||||||||| ||||| ||||||||||||| |||||| || |||||||| || |||||     
T  16163249 ctctatggatttttttagttgctcattaaagtattcgatgaaagagttgtaagctattaaacatccaaattcatcataatcctctttcttttggctaatc 16163150  T
Q  201 ttatttgacaata 213  Q
    || |||| |||||    
T  16163149 ttttttgtcaata 16163137  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 27229209 - 27229150
Alignment:
Q  138 atgaaagagttgtatgctatcaaacatccaaatttatcatagtcttctttcttctgacta 197  Q
    ||||||| |||||| | ||||||||||||||||| |||||| ||||||||||||||||||    
T  27229209 atgaaagtgttgtaagttatcaaacatccaaattcatcataatcttctttcttctgacta 27229150  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 25658762 - 25658664
Alignment:
Q  4 acacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 102  Q
    ||||||||||||| ||||||| ||| |||||| |||||| ||  |||||  ||||||| |||| ||||||||||||||| | |||||| |||| |||||    
T  25658762 acacaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggtatttatgtcttaatgtct 25658664  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 25665167 - 25665069
Alignment:
Q  4 acacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 102  Q
    ||||||||||||| ||||||| ||| |||||| |||||| ||  |||||  ||||||| |||| ||||||||||||||| | |||||| |||| |||||    
T  25665167 acacaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggtatttatgtcttaatgtct 25665069  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 25671572 - 25671474
Alignment:
Q  4 acacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 102  Q
    ||||||||||||| ||||||| ||| |||||| |||||| ||  |||||  ||||||| |||| ||||||||||||||| | |||||| |||| |||||    
T  25671572 acacaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggtatttatgtcttaatgtct 25671474  T

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Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 25677977 - 25677879
Alignment:
Q  4 acacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 102  Q
    ||||||||||||| ||||||| ||| |||||| |||||| ||  |||||  ||||||| |||| ||||||||||||||| | |||||| |||| |||||    
T  25677977 acacaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggtatttatgtcttaatgtct 25677879  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 25684653 - 25684555
Alignment:
Q  4 acacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 102  Q
    ||||||||||||| ||||||| ||| |||||| |||||| ||  |||||  ||||||| |||| ||||||||||||||| | |||||| |||| |||||    
T  25684653 acacaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggtatttatgtcttaatgtct 25684555  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 27229337 - 27229267
Alignment:
Q  10 catattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttga 80  Q
    ||||||||||||||| ||| |||||| ||||||||  ||||||   ||||||||||| |||| ||||||||    
T  27229337 catattgttgtggtgattgatataaacgtttgacaatattgtagtggtcaaagtatattatcctagcttga 27229267  T

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Target: scaffold0029 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 18364 - 18459
Alignment:
Q  7 caccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 102  Q
    ||||||||||||| |||| ||| |||||| ||||| ||||||| ||  |||||||||||| ||||||| ||| ||| || || || ||||||||||    
T  18364 caccatattgttgcggtgtttgatataaacgtttggcatcattatagtagtcaaagtatattatcttaacttcagggtgcttctgtcttagtgtct 18459  T

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Target: scaffold0029; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 43376 - 43471
Alignment:
Q  7 caccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 102  Q
    ||||||||||||| |||| ||| ||||||  |||| ||||||| ||  |||||||||||| ||||||| ||| ||| || || || ||||||||||    
T  43376 caccatattgttgcggtgtttgatataaacatttggcatcattatagtagtcaaagtatattatcttaacttcagggtgcttctgtcttagtgtct 43471  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 33120609 - 33120704
Alignment:
Q  7 caccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 102  Q
    ||||||||||||| |||| ||| |||||| ||||| ||||||| ||  |||||||||||| ||||||| ||| ||| || || || ||||||||||    
T  33120609 caccatattgttgcggtgtttgatataaacgtttggcatcattatagtagtcaaagtatattatcttaacttcagggtgcttctgtcttagtgtct 33120704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 33130352 - 33130447
Alignment:
Q  7 caccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 102  Q
    ||||||||||||| |||| ||| |||||| ||||| ||||||| ||  |||||||||||| ||||||| ||| ||| || || || ||||||||||    
T  33130352 caccatattgttgcggtgtttgatataaacgtttggcatcattatagtagtcaaagtatattatcttaacttcagggtgcttctgtcttagtgtct 33130447  T

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