View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17373_low_30 (Length: 224)
Name: NF17373_low_30
Description: NF17373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17373_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 30297265 - 30297478
Alignment:
| Q |
1 |
tttttaaagctgccccctcatccaaaataatgtccaggttcatcaaattcaaacaaaactccaccaccaaagttcagaaccatggttccttttcattttc |
100 |
Q |
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| T |
30297265 |
tttttaaagctgccccctcatccaaaataatgtccaggttcatcaaattcaaacaaaactccaccaccaaagttcagaaccatggttccttttcattttc |
30297364 |
T |
|
| Q |
101 |
gccacctcaattttgttcctttcaacacacgtcaaaatgcatgccacaaaatggccaaatgtttgtgcatgttaatcatatagctaccatttctattcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30297365 |
gccacctcaattttgttcctttcaacacacgtcaaaatgcatgccacaaaatggccaaatgtttgtgcatgttaatcatatagctaccatttctattcct |
30297464 |
T |
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| Q |
201 |
ataaataccctttg |
214 |
Q |
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|||||||||||||| |
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| T |
30297465 |
ataaataccctttg |
30297478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 30289783 - 30289964
Alignment:
| Q |
13 |
ccccctcatccaaaataatgtccaggttcatcaaattcaaacaaaactccaccaccaaagttcagaaccatggttccttttcattttcgccacctcaatt |
112 |
Q |
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|||||| || ||||| |||||| ||||||||||||||||||||||||||||||| | | |||||||||||||||||| ||||||||| |||| ||||||| |
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| T |
30289783 |
cccccttatacaaaagaatgtctaggttcatcaaattcaaacaaaactccaccaaccaggttcagaaccatggttccatttcatttttgccaactcaatt |
30289882 |
T |
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| Q |
113 |
ttgttcctttcaacacacgtcaaaatgcatgccacaaaatggccaaatgtttgtgcatgttaatcatatagctaccatttcta |
195 |
Q |
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| T |
30289883 |
ttgttcatttcaacacacgtcaaaatgcatgtcacaccatggccaaatgttggtgca-aataatcatatagctaccatttcta |
30289964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 172
Target Start/End: Original strand, 30313329 - 30313479
Alignment:
| Q |
23 |
caaaataatgtccaggttcatcaaattcaaacaaaactccaccacca-aagttcagaaccatggttccttttcattttcgccacctcaattttgttcctt |
121 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| | ||||||| || | |||| ||||||||||| |||| |||||||||||||||| |
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| T |
30313329 |
caaaagaatgtccaggttcatcaaattcaaacaaaactccaccaacttaagttcaatactacggtttcttttcatttttgccaactcaattttgttcctt |
30313428 |
T |
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| Q |
122 |
tcaacacacgtcaaaatgcatgccacaaaatggccaaatgtttgtgcatgt |
172 |
Q |
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|||||||||||||||||||||| ||| ||||||||||||| |||||||| |
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| T |
30313429 |
tcaacacacgtcaaaatgcatgtcacgccatggccaaatgttcgtgcatgt |
30313479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 172
Target Start/End: Original strand, 30284820 - 30284972
Alignment:
| Q |
21 |
tccaaaataatgtccaggttcatcaaattcaaacaaaactccaccacca-aagttcagaaccatggttccttttcattttcgccacctcaattttgttcc |
119 |
Q |
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||||||| |||||||||||||| |||||||||||||| |||||||||| |||||||| |||| |||| ||||||||||| |||| ||||||| ||||| |
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| T |
30284820 |
tccaaaagcatgtccaggttcattaaattcaaacaaaaatccaccaccataagttcagtaccacggtttcttttcatttttgccaactcaattgtgttca |
30284919 |
T |
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| Q |
120 |
tttcaacacacgtcaaaatgcatgccacaaaatggccaaatgtttgtgcatgt |
172 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||| |||||||| |
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| T |
30284920 |
tttcaacacacgtcaaaatgcatgtcacgccatggccaaatgttcgtgcatgt |
30284972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 30302480 - 30302649
Alignment:
| Q |
13 |
ccccctcatccaaaataatgtccaggttcatcaaattcaaacaaaactccaccaccaaagttcagaaccatggttccttttcattttcgccacctcaatt |
112 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||| |
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| T |
30302480 |
ccccctcatacaaaagaatgtccaggttcatcaaattcaaacaaaactccaccacccaagttcagtaccatggtt--------------ccacctcaatt |
30302565 |
T |
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| Q |
113 |
ttgttcctttcaacacacgtcaaaatgcatgccacaaaatggccaaatgtttgtgcatgttaatcatatagctaccatttctat |
196 |
Q |
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||| || |||||||||||||||||||||||| | || || |||||||||| ||||| |||||||||||| |||||||||||| |
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| T |
30302566 |
ttgatcatttcaacacacgtcaaaatgcatgtctcaccatagccaaatgttggtgcaaattaatcatatagataccatttctat |
30302649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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