View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17373_low_4 (Length: 620)
Name: NF17373_low_4
Description: NF17373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17373_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 15 - 609
Target Start/End: Complemental strand, 6802928 - 6802333
Alignment:
| Q |
15 |
atttgaacatgattgatgcagtcaattctagagaaatatgtttgattggttttgtcattgtttcggtatgtctgccttcaagctatatgataggtccaag |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6802928 |
atttgaacatgattgatgcagtcaattctagagaaatatgtttgattggttttgtcattgtttcggtatgtctgccttcaagctatatgatagatccaag |
6802829 |
T |
|
| Q |
115 |
atgacctatgttatgaagaagagaacgaagtcttctacttgtcatcttatgtccactcctgcgaagtatgattcattgttacgttgtataaagagattag |
214 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6802828 |
atgacccatgttatgaagaagagaacgaagtcttctacttgtcatcttatgtccactcctgcgaagtatgattcattgttacgttgtataaagagattag |
6802729 |
T |
|
| Q |
215 |
atcaagaaaggaaggtccaaccttttagggattttgcccaatc-cttccttcaataaagtttattgttcatgtgggaccatcccctacaatgatcatcct |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6802728 |
atcaagaaaggaaggtccaaccttttagggattttgcccaatcgcttcctccaataaagtttattgttcatgtgggaccatcccctacaatgatcatcct |
6802629 |
T |
|
| Q |
314 |
tccttcgacagatcttccatcacctcgttcagatgaagatgaggatgcaataatgtcggaagacatacctttcaatagattcttttcatgataagcatta |
413 |
Q |
| |
|
||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
6802628 |
tccttcgacggatctttcattacctcgttcagatgaagatgaggatgcaataatgtcggaagacatacctttcaatggattcttttcatgataagcagta |
6802529 |
T |
|
| Q |
414 |
ggcacttattctactttttggttttgttgaattggacagatggttggtcttgtggctctcgttttcttaatattgattgaatgggttctctcctgtcata |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6802528 |
ggcacttattctactttttggttttgttgaattggacagatagtcggtcttgtggccctcgttttcttaatattgattgaatgggttctctccagtcata |
6802429 |
T |
|
| Q |
514 |
tgcattttatttggattctatgtgaattatg-tttttatgaaaaataagtgttaactctagacgttatattttgaataatgttacgtgttatatttt |
609 |
Q |
| |
|
||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6802428 |
tgcattttatttggattttatg-gaattatgttttttatgaaaaataagtgttaactcttgacgttatattttgaataatgttacgtgttatatttt |
6802333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 81 - 230
Target Start/End: Complemental strand, 46614009 - 46613860
Alignment:
| Q |
81 |
tatgtctgccttcaagctatatgataggtccaagatgacctatgttatgaagaagagaacgaagtcttctacttgtcatcttatgtccactcctgcgaag |
180 |
Q |
| |
|
||||| ||||||||| |||||||||||| ||| ||| || ||||||||||||| || ||||||| ||||||||||| ||||| || || || |||| |
|
|
| T |
46614009 |
tatgtttgccttcaaactatatgataggaccatgattgccccggttatgaagaagataatgaagtctgctacttgtcattttatgccctcttcttagaag |
46613910 |
T |
|
| Q |
181 |
tatgattcattgttacgttgtataaagagattagatcaagaaaggaaggt |
230 |
Q |
| |
|
| || | ||||| ||||||| |||||||| ||||||||| |||||| |
|
|
| T |
46613909 |
aagagctcgtcgttacattgtatagagagattaaatcaagaaaagaaggt |
46613860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 45299138 - 45299094
Alignment:
| Q |
190 |
ttgttacgttgtataaagagattagatcaagaaaggaaggtccaa |
234 |
Q |
| |
|
|||||||||| |||| ||| ||||||||||||||||||||||||| |
|
|
| T |
45299138 |
ttgttacgttctatagagaaattagatcaagaaaggaaggtccaa |
45299094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University