View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17373_low_5 (Length: 593)
Name: NF17373_low_5
Description: NF17373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17373_low_5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 317 - 593
Target Start/End: Original strand, 40546736 - 40547011
Alignment:
| Q |
317 |
ccactagaccaagttctcaagactcggctatattgaagaagacaaattcttttggcatcatttataaataattcgaattataatatttaacatgttttta |
416 |
Q |
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| T |
40546736 |
ccactagaccaagttctcaagactcggctatattgaagaagacaaattcttttggcatcatttataaataattcgaattataatatttaacatgttttca |
40546835 |
T |
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| Q |
417 |
cacctttttgaattatatcattcgaaatgtagtaggcgtgcaagaagttagtagagtggaataaaaagttgtcatcgaagaattatagaggattcaagaa |
516 |
Q |
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| T |
40546836 |
cacctttt-gaattatatcattcgaaatgtagtaggcgtgcaagaagttagtagagtggaataaaaagttgtcatcgaagaattatagaggattcaagaa |
40546934 |
T |
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| Q |
517 |
tcaaaacaaatgtggatccatggacgaggtaggggaggaagaaatgttggccattgaaatgaagaggaattaagtca |
593 |
Q |
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| T |
40546935 |
tcaaaacaaatgtggatccatggacgaggtaggggaggaagaaatgttggccattgaaatgaagaggaattaagtca |
40547011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 40546422 - 40546686
Alignment:
| Q |
14 |
taatactaacattattaatttaatnnnnnnnnttgcatcctaacatattttaaccgaattgtttgtatgcaatatacttcatcaaattattgctcaaggt |
113 |
Q |
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| T |
40546422 |
taatactaacattattaatttaataaaaaaaattgcatcctaacatattttaaccgaattgtttgtatgcaatatacttcatcaaattattgctcaaggt |
40546521 |
T |
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| Q |
114 |
tgaaggtaactaatgatcaatacattgaagagatata----------gagagagaaacaaaagatgttcgtggagaagagaactttgaatcctaattaag |
203 |
Q |
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| T |
40546522 |
tgaaggtaactaatgatcaatacattgaagagatatatagagagagagagagagaaacaaaagatgttcgtggagaagagaactttgaatcctaattaag |
40546621 |
T |
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| Q |
204 |
ttggattgtgttgtgtgtgcctttgacaaatcaaatgatcaatacttgatgatcattgactaatt |
268 |
Q |
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| T |
40546622 |
ttggattgtgttgtgtgtgcctttgacaaatcaaatgatcaatacttgatgatcattgaataatt |
40546686 |
T |
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