View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17373_low_6 (Length: 483)
Name: NF17373_low_6
Description: NF17373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17373_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 20 - 479
Target Start/End: Original strand, 37793134 - 37793605
Alignment:
| Q |
20 |
ggacagagccatatatgatagacacttcctattccccatataagcaccctacattggaagaagccaataaatttgaaggagttttagagaacaacaataa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37793134 |
ggacagagccatatatgatagacacttcctattccccatataagcaccctacattggaagaagccaataaatttgaaggagttttagagaacaacaataa |
37793233 |
T |
|
| Q |
120 |
tcctaatactgcatctaccacaatatcatatgagaatccaattcttgatgacaatgaccttcattttatggatgcatacatagaga------------at |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
37793234 |
tcctaatactgcatctaccacaatatcatatgagaatccaattcttgatgacaatgaccttcattttatggatgcatacatagagaatttgagtgagaat |
37793333 |
T |
|
| Q |
208 |
ttctggtcagagccatatatgattgacagttcacatgtccttcgtaatcaccttacaatggaagaagccaagaaaattgaaggagtttttgagtacaaca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37793334 |
ttctggtcagagccatatatgattgacagttcacatttccttcgtaatcaccttacaatggaagaagccaagaaaattgaaggagtttttgagtacaaca |
37793433 |
T |
|
| Q |
308 |
ttgatcccaatagtgttagtccagtatcttcacaaccatcatcaaatggattctcttcaataacaatggaaaatgttacttccacaatatcacatgaaaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37793434 |
ttgatcccaatagtgttagtccagtatcttcacaaccatcatcaaatggattctcttcaataacaatggaaaatgttacttccacaatatcacatgaaaa |
37793533 |
T |
|
| Q |
408 |
tcctttaatggatgcattatttcctgcagagtgtgaacatgaatactttagttctgtgtacgatgtagaatt |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37793534 |
tcctttaatggatgcattatttcctgcagagtgtgaacatgaatactttagttctgtgtacgatgtagaatt |
37793605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 202 - 408
Target Start/End: Original strand, 37792860 - 37793066
Alignment:
| Q |
202 |
gagaatttctggtcagagccatatatgattgacagttcacatgtccttcgtaatcaccttacaatggaagaagccaagaaaattgaaggagtttttgagt |
301 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||| |||| |||||| | |||||||| ||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
37792860 |
gagaatttctggacagagccatatatgatagacaattcatatgtcccccataatcaccctacaatggaagaaaccaagaaacttgaaggagtttttgaga |
37792959 |
T |
|
| Q |
302 |
acaacattgatcccaatagtgttagtccagtatcttcacaaccatcatcaaatggattctcttcaataacaatggaaaatgttacttccacaatatcaca |
401 |
Q |
| |
|
|||| || |||||||||| | |||||| ||||||||||||||| |||| ||||||||||| ||||||| |||||| | ||||||| |||||||| |
|
|
| T |
37792960 |
acaatatcgatcccaatattacgagtccactatcttcacaaccattttcaagtggattctcttgcataacaacagaaaatttcgcttccactatatcaca |
37793059 |
T |
|
| Q |
402 |
tgaaaat |
408 |
Q |
| |
|
||||||| |
|
|
| T |
37793060 |
tgaaaat |
37793066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 37792870 - 37792963
Alignment:
| Q |
20 |
ggacagagccatatatgatagacacttcctattccccatataagcaccctacattggaagaagccaataaatttgaaggagttttagagaacaa |
113 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| ||| |||| ||||||||| |||||||| |||| ||| ||||||||||||| |||||||| |
|
|
| T |
37792870 |
ggacagagccatatatgatagacaattcatatgtcccccataatcaccctacaatggaagaaaccaagaaacttgaaggagtttttgagaacaa |
37792963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 37792672 - 37792745
Alignment:
| Q |
59 |
ataagcaccctacattggaagaagccaataaatttgaaggagttttagagaacaacaataatcctaatactgca |
132 |
Q |
| |
|
|||| |||||||||||||||||| | || |||||||||| ||||||||||| ||||||| ||||||||| |||| |
|
|
| T |
37792672 |
ataatcaccctacattggaagaacctaagaaatttgaagtagttttagagagcaacaatgatcctaatattgca |
37792745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University