View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17374_high_1 (Length: 527)

Name: NF17374_high_1
Description: NF17374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17374_high_1
NF17374_high_1
[»] chr4 (8 HSPs)
chr4 (13-390)||(18343719-18344099)
chr4 (52-182)||(36638870-36639000)
chr4 (398-513)||(18343570-18343685)
chr4 (429-478)||(506506-506555)
chr4 (429-478)||(18042075-18042124)
chr4 (428-466)||(18179696-18179734)
chr4 (232-266)||(36639056-36639090)
chr4 (405-513)||(50593542-50593649)
[»] scaffold0002 (4 HSPs)
scaffold0002 (13-355)||(163237-163589)
scaffold0002 (398-513)||(163684-163799)
scaffold0002 (427-469)||(190645-190687)
scaffold0002 (355-390)||(163610-163645)
[»] chr1 (3 HSPs)
chr1 (22-328)||(9857643-9857946)
chr1 (428-466)||(31265991-31266029)
chr1 (429-465)||(49771361-49771397)
[»] chr3 (4 HSPs)
chr3 (417-513)||(54630181-54630277)
chr3 (429-478)||(17223707-17223756)
chr3 (427-468)||(13226970-13227011)
chr3 (134-182)||(31878210-31878258)
[»] chr6 (4 HSPs)
chr6 (398-451)||(31058812-31058865)
chr6 (429-478)||(14543003-14543052)
chr6 (341-390)||(31058724-31058773)
chr6 (428-466)||(4639385-4639423)
[»] scaffold0008 (1 HSPs)
scaffold0008 (429-478)||(265168-265217)
[»] chr7 (4 HSPs)
chr7 (429-478)||(6930438-6930487)
chr7 (427-468)||(1399882-1399923)
chr7 (427-468)||(18961072-18961112)
chr7 (427-468)||(18993033-18993073)
[»] chr5 (1 HSPs)
chr5 (429-478)||(19153780-19153829)
[»] scaffold1779 (1 HSPs)
scaffold1779 (423-513)||(48-138)
[»] scaffold0625 (1 HSPs)
scaffold0625 (427-468)||(8623-8664)
[»] scaffold0330 (2 HSPs)
scaffold0330 (310-355)||(13433-13478)
scaffold0330 (355-390)||(13377-13412)
[»] chr2 (1 HSPs)
chr2 (430-478)||(17442387-17442435)
[»] scaffold0477 (1 HSPs)
scaffold0477 (428-466)||(8693-8731)


Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 390
Target Start/End: Complemental strand, 18344099 - 18343719
Alignment:
Q  13 gaacctgtgaatacctaagattatattaaatttcataatcttactgattcgttagatgggatggcggacggaactaagaattcattattttttgaggagt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18344099 gaacctgtgaatacctaagattatattaaatttcataatcttactgattcattagatgggatggcggacggaactaagaattcattattttttgaggagt 18344000  T
Q  113 tgtggactaacccaacattacatcttaaatttataatgaaagagtaaatattcgcccgcgaaaatgtggannnnnnngaatttagaaatttttgccaata 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  18343999 tgtggactaacccaacattacatcttaaatttataatgaaagagtaaatattcgcccgcgaaaatgtggatttttttgaatttagaaatttttgccaata 18343900  T
Q  213 tgataat---nnnnnnnnngagaaatatggattcgttagaaccttatatcaaaacaacattatctagttagatatggatagcaaaaaaggtctataagaa 309  Q
    |||||||            || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18343899 tgataataaaaaaaaaaaagacaaatatggattcgttagaaccttatatcaaaacaacattatctagttagatatggatagcaaaaatggtctataagaa 18343800  T
Q  310 tccatatttggttctatatcaaagcaagatatacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaa 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343799 tccatatttggttctatatcaaagcaagatatacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaa 18343719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 52 - 182
Target Start/End: Original strand, 36638870 - 36639000
Alignment:
Q  52 cttactgattcgttagatgggatggcggacggaactaagaattcattattttttgaggagttgtggactaacccaacattacatcttaaatttataatga 151  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36638870 cttactaattcattagatgggatggcggacggaactaagaattcattattttttgaggagttgtggactaacccaacattacatcttaaatttataatga 36638969  T
Q  152 aagagtaaatattcgcccgcgaaaatgtgga 182  Q
    |||||| ||||||||||||||||||||||||    
T  36638970 aagagtgaatattcgcccgcgaaaatgtgga 36639000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 398 - 513
Target Start/End: Complemental strand, 18343685 - 18343570
Alignment:
Q  398 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatca 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343685 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatca 18343586  T
Q  498 actataaccccaaaag 513  Q
    ||||||||||||||||    
T  18343585 actataaccccaaaag 18343570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 429 - 478
Target Start/End: Original strand, 506506 - 506555
Alignment:
Q  429 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 478  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  506506 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 506555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 429 - 478
Target Start/End: Complemental strand, 18042124 - 18042075
Alignment:
Q  429 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 478  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18042124 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 18042075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 466
Target Start/End: Complemental strand, 18179734 - 18179696
Alignment:
Q  428 gaggagccgtatgaggtgaaaatctcatgtacggttctg 466  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  18179734 gaggagccgtatgagatgaaaatctcacgtacggttctg 18179696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 266
Target Start/End: Original strand, 36639056 - 36639090
Alignment:
Q  232 aaatatggattcgttagaaccttatatcaaaacaa 266  Q
    |||||||||||||||||||| ||||||||||||||    
T  36639056 aaatatggattcgttagaacattatatcaaaacaa 36639090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 513
Target Start/End: Original strand, 50593542 - 50593649
Alignment:
Q  405 tatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatcaactataa 504  Q
    |||||||  |||||||||| | ||| ||||||| ||||  |||||||| | || | ||| |||||||||||| ||||||| ||| |||||  ||||||||    
T  50593542 tattttttgatcgatttatgcacgatgagccgtgtgagacgaaaatctaacgtgcagtt-tgtaatagagatagaattgataaacaaccactaactataa 50593640  T
Q  505 ccccaaaag 513  Q
    |||| ||||    
T  50593641 cccccaaag 50593649  T

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Target: scaffold0002 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 355
Target Start/End: Original strand, 163237 - 163589
Alignment:
Q  13 gaacctgtgaatacctaagattatattaaatttcataatcttactgattcgttagatgggatggcggacggaactaagaattcattattttttgaggagt 112  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  163237 gaacttgtgaatacttaagattatattaaatttcataatcttactgattcattagatgggatggtggacggaactaagaattcattattttttgaggagt 163336  T
Q  113 tgtggactaacccaacattacatcttaaatttataatgaaagagt-aaatattcgcccgcgaaaatgtgga-nnnnnnngaatttagaaatttttgcca- 209  Q
    |||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||         |||||||||||||||||||     
T  163337 tgtggactaatccaacatcacatcttaaatttataatgaaagagtaaaatattcgcccgcgaaaatgtggatttttttttaatttagaaatttttgccaa 163436  T
Q  210 ---atatgataat----nnnnnnnnngagaaatatggattcgttagaaccttatatcaaaacaacattatctagttagatatggatagcaaaaaaggtct 302  Q
       ||||||||||             || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  163437 tatatatgataataaaaaaaaaaaaagacaaatatggattcgttagaaccttatatcaaaacaacattatctagttagatatggatagcaaaaatggtct 163536  T
Q  303 ataagaatccatatttggttctatatcaaagcaagatatacaaatttctaata 355  Q
    |||| ||||||||||||||| |||||| |||||||||||||||||||||||||    
T  163537 ataaaaatccatatttggttttatatccaagcaagatatacaaatttctaata 163589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 398 - 513
Target Start/End: Original strand, 163684 - 163799
Alignment:
Q  398 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatca 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  163684 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataactatca 163783  T
Q  498 actataaccccaaaag 513  Q
    ||||||||||||||||    
T  163784 actataaccccaaaag 163799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 427 - 469
Target Start/End: Original strand, 190645 - 190687
Alignment:
Q  427 cgaggagccgtatgaggtgaaaatctcatgtacggttctgtaa 469  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  190645 cgaggagccgtatgaggtgaaaatctcatgtacggttctgtaa 190687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 390
Target Start/End: Original strand, 163610 - 163645
Alignment:
Q  355 atgtcaaaaaatcccgcgattgtattctattttaaa 390  Q
    ||||||||||||||||||||| ||||||||||||||    
T  163610 atgtcaaaaaatcccgcgattctattctattttaaa 163645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 9e-62; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 22 - 328
Target Start/End: Original strand, 9857643 - 9857946
Alignment:
Q  22 aatacctaagattatattaaatttcataatcttactgattcgttagatgggatggcggacggaactaagaattcattattttttgaggagttgtggacta 121  Q
    ||||||| | |||||||||||||| ||||||||| |||||| |||||| |||||| ||||  |||||||||||||||||||||||||||||||||| |||    
T  9857643 aatacctcaaattatattaaatttaataatcttattgattcattagattggatggtggacaaaactaagaattcattattttttgaggagttgtgggcta 9857742  T
Q  122 acccaacattacatcttaaatttataatgaaagagt-aaatattcgcccgcgaaaatgtggannnnnnngaatttagaaatttttgccaatatgataatn 220  Q
    | |  ||||||||||||||||||||||||||||||| |||||||| |  | |||||||||||       ||||||| ||||||||||||||||||| |      
T  9857743 atctgacattacatcttaaatttataatgaaagagtaaaatattcacatgtgaaaatgtggatttttttgaatttataaatttttgccaatatgatta-a 9857841  T
Q  221 nnnnnnnngagaaatatggattcgttagaaccttatatcaaaacaacattatctagttagatatggatagcaaaaaaggtctataagaatccatatttgg 320  Q
            || |||||||||||  |||||||||  |||||||||||||||||||||||||| || ||||||||||| |||||||| |||||||||||| |    
T  9857842 aaaaaaaagacaaatatggattttttagaacct--tatcaaaacaacattatctagttagacat-gatagcaaaaatggtctatacgaatccatatttcg 9857938  T
Q  321 ttctatat 328  Q
    ||||||||    
T  9857939 ttctatat 9857946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 466
Target Start/End: Complemental strand, 31266029 - 31265991
Alignment:
Q  428 gaggagccgtatgaggtgaaaatctcatgtacggttctg 466  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  31266029 gaggagccgtatgagatgaaaatctcacgtacggttctg 31265991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 465
Target Start/End: Complemental strand, 49771397 - 49771361
Alignment:
Q  429 aggagccgtatgaggtgaaaatctcatgtacggttct 465  Q
    |||||||||||||||||||||||| |||||| |||||    
T  49771397 aggagccgtatgaggtgaaaatcttatgtacagttct 49771361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 417 - 513
Target Start/End: Complemental strand, 54630277 - 54630181
Alignment:
Q  417 gatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatcaactataaccccaaaag 513  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||| |||||||    
T  54630277 gatttattcgtgaggagctgtatggggtgaaaatctcatgtacgattttgtaatagagatggaattgagaaataactatcaactataacaccaaaag 54630181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 429 - 478
Target Start/End: Complemental strand, 17223756 - 17223707
Alignment:
Q  429 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 478  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17223756 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 17223707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 427 - 468
Target Start/End: Original strand, 13226970 - 13227011
Alignment:
Q  427 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 468  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13226970 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 13227011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 31878210 - 31878258
Alignment:
Q  134 atcttaaatttataatgaaagagtaaatattcgcccgcgaaaatgtgga 182  Q
    |||||||||||||||| ||||||||| ||||||  ||| ||||||||||    
T  31878210 atcttaaatttataattaaagagtaattattcggtcgcaaaaatgtgga 31878258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 9e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 398 - 451
Target Start/End: Original strand, 31058812 - 31058865
Alignment:
Q  398 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatc 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31058812 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatc 31058865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 429 - 478
Target Start/End: Original strand, 14543003 - 14543052
Alignment:
Q  429 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 478  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14543003 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 14543052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 341 - 390
Target Start/End: Original strand, 31058724 - 31058773
Alignment:
Q  341 tacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaa 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31058724 tacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaa 31058773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 466
Target Start/End: Original strand, 4639385 - 4639423
Alignment:
Q  428 gaggagccgtatgaggtgaaaatctcatgtacggttctg 466  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  4639385 gaggagccgtatgagatgaaaatctcacgtacggttctg 4639423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 429 - 478
Target Start/End: Complemental strand, 265217 - 265168
Alignment:
Q  429 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 478  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  265217 aggagccgtatgaggtgaaaatcttatgtacggttctgtaatagagatgg 265168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 429 - 478
Target Start/End: Original strand, 6930438 - 6930487
Alignment:
Q  429 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 478  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6930438 aggagccgtatgaggtgaaaatctcatgtacggttctgtattagagatgg 6930487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 427 - 468
Target Start/End: Original strand, 1399882 - 1399923
Alignment:
Q  427 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 468  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  1399882 cgaggagtcgtatgaggtgaaaatctcatgtacggttctgta 1399923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 427 - 468
Target Start/End: Original strand, 18961072 - 18961112
Alignment:
Q  427 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 468  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  18961072 cgaggagcc-tatgaggtgaaaatctcatgtacggttctgta 18961112  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 427 - 468
Target Start/End: Original strand, 18993033 - 18993073
Alignment:
Q  427 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 468  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  18993033 cgaggagcc-tatgaggtgaaaatctcatgtacggttctgta 18993073  T

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Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 429 - 478
Target Start/End: Complemental strand, 19153829 - 19153780
Alignment:
Q  429 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 478  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19153829 aggagccgtacgaggtgaaaatctcatgtacggttctgtaatagagatgg 19153780  T

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Target: scaffold1779 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold1779
Description:

Target: scaffold1779; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 423 - 513
Target Start/End: Original strand, 48 - 138
Alignment:
Q  423 ttcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatcaactataaccccaaaag 513  Q
    |||||||||||| | |||||  |||| |||||||| | |||||||| ||||||||||||| | ||| || |||||||||||||||||||||    
T  48 ttcgcgaggagctggatgagaagaaactctcatgtccagttctgtagtagagatggaattcataaacaaacatcaactataaccccaaaag 138  T

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Target: scaffold0625 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 427 - 468
Target Start/End: Complemental strand, 8664 - 8623
Alignment:
Q  427 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 468  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8664 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 8623  T

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Target: scaffold0330 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 355
Target Start/End: Complemental strand, 13478 - 13433
Alignment:
Q  310 tccatatttggttctatatcaaagcaagatatacaaatttctaata 355  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  13478 tccatatttggttctatatcaaagcaaaatatacaaatttctaata 13433  T

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Target: scaffold0330; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 390
Target Start/End: Complemental strand, 13412 - 13377
Alignment:
Q  355 atgtcaaaaaatcccgcgattgtattctattttaaa 390  Q
    ||||||||||||| ||||||||||||||||||||||    
T  13412 atgtcaaaaaatctcgcgattgtattctattttaaa 13377  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 430 - 478
Target Start/End: Complemental strand, 17442435 - 17442387
Alignment:
Q  430 ggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 478  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  17442435 ggagccgtacgaggtgaaaatctcatgtacggttttgtaatagagatgg 17442387  T

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Target: scaffold0477 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 466
Target Start/End: Complemental strand, 8731 - 8693
Alignment:
Q  428 gaggagccgtatgaggtgaaaatctcatgtacggttctg 466  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  8731 gaggagccgtatgagatgaaaatctcacgtacggttctg 8693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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