View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17374_high_2 (Length: 445)
Name: NF17374_high_2
Description: NF17374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17374_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 50387501 - 50387077
Alignment:
| Q |
1 |
cagagagcaacgaaataagtcatgcaatatttaaagagaacaaaagactacattctcgcatatcagaggttagatcagcttcagaacattggatatactg |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50387501 |
cagaaagcaacgaaataagtcatgcaatatttaaagagaacaaaagactacattctcgcatatcagaggttagatcagcttcagaacattggatatactg |
50387402 |
T |
|
| Q |
101 |
actctgattttgttggatgcaaagataacatgttttgagacaattgcgaagctttgttacagggatggacatagtggatgtggagnnnnnnnnn--atat |
198 |
Q |
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| T |
50387401 |
actctgattttgttggatgcaaagataacatgttttgagacaattgcgaagctttgttacagggatggacatagtggatgtggagtttttttttttatat |
50387302 |
T |
|
| Q |
199 |
aaaaatacactaaagttattttatgacagtaaatcaacatgtatatttccaataacaacagaaaatcgacgaagttgaaacacataaagatcaagttcct |
298 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50387301 |
aaaaatacactaaagttattgt--gacagtaaatcaacatgtatatttccaataacaacagaaaatcgacgaagttgaaacacataaagatcaagttcct |
50387204 |
T |
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| Q |
299 |
tgttgttaaagaaagagttcagagtcgatagttgtctatggagaatatcgtaccaaacttcacggttgcatctcattatcacaaggagactctcagtgat |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
50387203 |
tgttgttaaagaaagagttcagagtcgatagttgtctatggagaatatcgtaccaaacttcacggttgcatctcattatcacaaggaga--ctcagtgat |
50387106 |
T |
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| Q |
399 |
tatgaataaattcaggtatgtgtccgcat |
427 |
Q |
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| T |
50387105 |
tatgaataaattcaggtatgtgtccgcat |
50387077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 29242619 - 29242547
Alignment:
| Q |
6 |
agcaacgaaataagtcatgcaatatttaaagagaacaaaagactacattctcgc-atatcagaggttagatca |
77 |
Q |
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|||||| |||| |||||||| || ||||||||||||||||||||||| ||| | ||||| |||||||||||| |
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| T |
29242619 |
agcaaccaaatgggtcatgcagtacttaaagagaacaaaagactacatgctcacaatatcggaggttagatca |
29242547 |
T |
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