View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17374_high_3 (Length: 348)
Name: NF17374_high_3
Description: NF17374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17374_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 1554436 - 1554088
Alignment:
| Q |
1 |
caagtaacttctatttcgacacagnnnnnnngtagagtcacgttacaagatgatttgatcacttaatgcttttgaatgcttaaatttattgtatcaataa |
100 |
Q |
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| T |
1554436 |
caagtaacttctatttcgacacagtttttttgtagagtcactttacaagatgatttgatcacttaatgcttttgaatgcttaaatttattgtatcaataa |
1554337 |
T |
|
| Q |
101 |
gaacattgtgtaa--gttgacaaaatttcagtcagataagtgtaataataaactaactagttgacaaatacaattacagcatgagaatatatctgtttca |
198 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1554336 |
gaacattgtgtaaaagttgacaaaatttcagtcagataagtgtaataataaactaactagttgacaaatacaattacagcatgagaatatatctgtttca |
1554237 |
T |
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| Q |
199 |
actatagttctataagaaacaaaattatacatagaatac-aacaaattaatatgtcatcaaaataaaataaaattagtgcatgtatcagcttctttcaag |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| |
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| T |
1554236 |
actatagttctataagaaacaaaattatacatagaatacaaacaaattaatatgtcatcaaaataaaataaagttagtgcatgtatcagctt-tttgaag |
1554138 |
T |
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| Q |
298 |
ctcaagcacttcaaaatggatgatgtatcggtatacgatacgtattctgc |
347 |
Q |
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||||| ||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
1554137 |
ctcaaacacttcaaaatggatgatgtaccggtttacgatacgtattctgc |
1554088 |
T |
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