View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17374_low_12 (Length: 203)
Name: NF17374_low_12
Description: NF17374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17374_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 4873446 - 4873615
Alignment:
| Q |
15 |
agcataggacttgtttttgttgtaaggtaactttttaccaccaaatctccttccaacgatatcagccataccatctcctgcacacaaattacagattgca |
114 |
Q |
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| T |
4873446 |
agcataggacttgtttttgttgtaaggtaactttttaccaccaaatctccttccaacgatatcagccataccatctcctgcacacaaattacagattgca |
4873545 |
T |
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| Q |
115 |
gcaatggaaataggcgaagttctccagtatattatcgatgcaaacacaatagttgcaacataatacagtg |
184 |
Q |
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| T |
4873546 |
gcaatggaaacaggcgaagttctccagtatattatcgatgcaaacacaatagttgcaacataatacagtg |
4873615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 184
Target Start/End: Original strand, 4893105 - 4893270
Alignment:
| Q |
19 |
taggacttgtttttgttgtaaggtaactttttaccaccaaatctccttccaacgatatcagccataccatctcctgcacacaaattacagattgcagcaa |
118 |
Q |
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| T |
4893105 |
taggacttgtttttgttgtaaggtaactttttaccaccaaatctccttccaacgatatcagccataccatctcctgcacacaaattacagattgcagcaa |
4893204 |
T |
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| Q |
119 |
tggaaataggcgaagttctccagtatattatcgatgcaaacacaatagttgcaacataatacagtg |
184 |
Q |
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| T |
4893205 |
tggaaacaggcgaagttctccagtatattatcgatgcaaacgtaatagttgcagcataatacagtg |
4893270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 83 - 184
Target Start/End: Original strand, 26330864 - 26330965
Alignment:
| Q |
83 |
taccatctcctgcacacaaattacagattgcagcaatggaaataggcgaagttctccagtatattatcgatgcaaacacaatagttgcaacataatacag |
182 |
Q |
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| T |
26330864 |
taccatctcctgcacacagattacatatcgcagcaatggaaataggggaagttctccagtatatcatggacgccaaagtaatagtagcagcataatacag |
26330963 |
T |
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| Q |
183 |
tg |
184 |
Q |
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|| |
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| T |
26330964 |
tg |
26330965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 26330622 - 26330693
Alignment:
| Q |
15 |
agcataggacttgtttttgttgtaaggtaactttttaccaccaaatctccttccaacgatatcagccatacc |
86 |
Q |
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|||||||||||||||||||||||||||||| |||| || ||||| |||||||| || || || |||||||| |
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| T |
26330622 |
agcataggacttgtttttgttgtaaggtaatttttcactgccaaacctccttcccacaatgtcggccatacc |
26330693 |
T |
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