View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17374_low_7 (Length: 280)
Name: NF17374_low_7
Description: NF17374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17374_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 262
Target Start/End: Complemental strand, 47280847 - 47280599
Alignment:
| Q |
14 |
aacctgtgagattggaggagctaaggaacatttggcagcatgtaattcggaataaggagtcccagtttgtttggtctgtggagctgcaccgcaagtttct |
113 |
Q |
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| T |
47280847 |
aacctgtgagattggaggagctaaggaacatttggcagcatgtaattcggaataaggagtcccagtttgtttggtctgtggagctgcaccgcaagtttct |
47280748 |
T |
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| Q |
114 |
tgaaactgttaatcagttaggagttgacagtatgttcttcactctctctgcaacactagaactatttttatatcctatcaatttcctcgagctttaccga |
213 |
Q |
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| T |
47280747 |
tgaaactgttaatcagttaggagttgacagtatgttcttcactctctctgcaacactagaactatttttatatcctatcaatttcctcgagctttaccga |
47280648 |
T |
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| Q |
214 |
attttatttctcattttaaactattaaattatttttgaatatctggttt |
262 |
Q |
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| T |
47280647 |
attttatttctcattttaaactattaaattatttttgaatatctggttt |
47280599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 80 - 266
Target Start/End: Complemental strand, 49060699 - 49060515
Alignment:
| Q |
80 |
ttgtttggtctgtggagctgcaccgcaagtttcttgaaactgttaatcagttaggagttgacagtatgttcttcactctctctgcaacactagaactatt |
179 |
Q |
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| T |
49060699 |
ttgtttggtctgtggagctgcaccgcaagtttgttgctgctgttaatcagttaggcattgacagtatgttcttcactctgcctgcaacac--aaacaatt |
49060602 |
T |
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| Q |
180 |
tttatatcctatcaatttcctcgagctttaccgaattttatttctcattttaaactattaaattatttttgaatatctggtttgatg |
266 |
Q |
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| T |
49060601 |
tttatatcttatcaatttcctcgagctttactgaattttatttcaaattttacattatcaaaatgtttttgaatatctggtttgatg |
49060515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 71 - 231
Target Start/End: Complemental strand, 47275075 - 47274917
Alignment:
| Q |
71 |
agtcccagtttgtttggtctgtggagctgcaccgcaagtttcttgaaactgttaatcagttaggagttgacagtatgttcttcactctctctgcaacact |
170 |
Q |
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| T |
47275075 |
agtcccagtctgtttggtctgtggagctgcaccacaaatttgttgctgctgttaatcagttaggcattgacagtatgttctccactctgtccgcaacac- |
47274977 |
T |
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| Q |
171 |
agaactatttttatatcctatcaatttcctcgagctttaccgaattttatttctcatttta |
231 |
Q |
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| T |
47274976 |
-aaacaatttttatatcctatcaatttcctcgagcttgaccgatttttatttctcatttta |
47274917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 49060963 - 49060903
Alignment:
| Q |
14 |
aacctgtgagattggaggagctaaggaacatttggcagcatgtaattcggaataaggagtc |
74 |
Q |
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| T |
49060963 |
aacctgtgagattagaggagctaaagaacatttggcagcatgtaattaggaagaagaagtc |
49060903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 47275162 - 47275111
Alignment:
| Q |
14 |
aacctgtgagattggaggagctaaggaacatttggcagcatgtaattcggaa |
65 |
Q |
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| T |
47275162 |
aacctgtgagattacaggagctaaagaccatttggcagcatgtaattcggaa |
47275111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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