View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17375_high_1 (Length: 357)

Name: NF17375_high_1
Description: NF17375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17375_high_1
NF17375_high_1
[»] chr2 (1 HSPs)
chr2 (10-308)||(7685688-7685986)


Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 10 - 308
Target Start/End: Complemental strand, 7685986 - 7685688
Alignment:
Q  10 agataatactagtagcttccaaaaggagaaagaatataaaactatattcaaccatagttgtatatcaagaaccaaaccgatcatgtctcacatagctgtt 109  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7685986 agataaaactagtagcttccaaaaggagaaagaatataaaactatattcaaccatagttgtatatcaagaaccaaaccgatcatgtctcacatagctgtt 7685887  T
Q  110 gagaggaacagaagaagacagatgaatgaacatctcaaggttttaaggtcgttgaccccttgtttctatattaaaagggtaaatatatattatttacatc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7685886 gagaggaacagaagaagacagatgaatgaacatctcaaggttttaaggtcgttgaccccttgtttctatattaaaagggtaaatatatactatttacatc 7685787  T
Q  210 cctatctgttttttacctattgaatcaaaaactgaaaacatgaaatcactcttaataaatttcatggctaaatattagaaagtttaatactaaggacta 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7685786 cctatctgttttttacctattgaatcaaaaactgaaaacatgaaatcactcttaataaatttcatggctaaatattagaaagtttaatactaaggacta 7685688  T

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