View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17375_low_2 (Length: 295)
Name: NF17375_low_2
Description: NF17375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17375_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 282
Target Start/End: Original strand, 42192918 - 42193182
Alignment:
| Q |
16 |
ctgcgtggagatagagaagctacaccttgtagattcaaggtggacacacattgactagaagttggacgtgaaaacaaataggtgttaagcttatcgagga |
115 |
Q |
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| T |
42192918 |
ctgcgtggagatagagaagctacaccttgtagattcaaggtggacacacattgactagaagttggacgtgaaaacaaagaggtgttaagcttatcgagga |
42193017 |
T |
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| Q |
116 |
agctgaggccctttgtttagaactctgctgccatgttaaaaatagtgtgacaaatagagagactgtgtttttgaatgtgcttgaattgcatagcacccaa |
215 |
Q |
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| T |
42193018 |
agctgaggcccttagtttagaactctgctgccgtgttaaaaata--gtgacaaaaagagagactgtgtttttgaatgtgcttgaattgcatagcacccaa |
42193115 |
T |
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| Q |
216 |
caacatgcttgcttaatttatacatatatacgttagctataatgataggaaatgagaagtacaattt |
282 |
Q |
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| T |
42193116 |
caacatgcttgcttaatttatacatatatacgttagctataatgataggaaatgagaagtacaattt |
42193182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 83 - 243
Target Start/End: Complemental strand, 3561972 - 3561814
Alignment:
| Q |
83 |
gtgaaaacaaataggtgttaagcttatcgaggaagctgaggccctttgtttag-aactctgctgccatgttaaaaatagtgtgacaaatagagagactgt |
181 |
Q |
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| T |
3561972 |
gtgaaaacaaacaggggctaagcttatcgaggaagctgagtctcttagattaggaactctgctgccatgttaaaaatagtgtgaaaaatagaga--ctgt |
3561875 |
T |
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| Q |
182 |
gtttttgaatgtgcttgaattgcatagcacccaacaacatgcttgcttaatttatacatata |
243 |
Q |
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| T |
3561874 |
-ttttcgaatgtgcttgaattgcatagcacccaacaacatgcttgcttaatttatacatata |
3561814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 35707623 - 35707576
Alignment:
| Q |
187 |
tgaatgtgcttgaattgcatagcacccaacaacatgcttgcttaattt |
234 |
Q |
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| T |
35707623 |
tgaatgtgcttgaattgcatagcactcaacaacatgcttgcttaattt |
35707576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 8171153 - 8171203
Alignment:
| Q |
187 |
tgaatgtgcttgaattgcatagcacccaacaacatgcttgcttaatttata |
237 |
Q |
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| T |
8171153 |
tgaatgcgcttgagttgcttagcacccaataacatgcttgcttaatttata |
8171203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 34175697 - 34175647
Alignment:
| Q |
187 |
tgaatgtgcttgaattgcatagcacccaacaacatgcttgcttaatttata |
237 |
Q |
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| T |
34175697 |
tgaatgtgcttgaattgcatagcactcaacaacatgcttgcttgatttata |
34175647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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