View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17375_low_3 (Length: 268)
Name: NF17375_low_3
Description: NF17375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17375_low_3 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 45283351 - 45283601
Alignment:
| Q |
16 |
atatcacttgaaaattccgaggaagaagaaccgaacgagaatgattcttataagctgtactccatgacaatttcatagcatagtattatccgtaatgcaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283351 |
atatcacttgaaaattccgaggaagaagaaccgaacgagaatgattcttataagctgtactccatgacaatttcatagcatagtattatccgtaatgcaa |
45283450 |
T |
|
| Q |
116 |
aactaattaaaacaacttcctaaacaattttcccatgttcatttcactcttgtttttgtctccattcattattttcttttcttcccaacttaactacagg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283451 |
aactaattaaaacaacttcctaaacaattttcccatgttcatttca--cttgtttttgtctccattcattattttcttttcttcccaacttaactacagg |
45283548 |
T |
|
| Q |
216 |
tatgatgtatgtatgtatctatctatattgcctctaatattaaatttctttta |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283549 |
tatgatgtatgtatgtatctatctatattgcctctaatattaaatttctttta |
45283601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University