View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17375_low_4 (Length: 242)

Name: NF17375_low_4
Description: NF17375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17375_low_4
NF17375_low_4
[»] chr5 (18 HSPs)
chr5 (81-242)||(24695512-24695673)
chr5 (81-242)||(18569909-18570070)
chr5 (83-241)||(19714545-19714703)
chr5 (87-241)||(19707265-19707419)
chr5 (86-235)||(27347531-27347679)
chr5 (81-190)||(39537962-39538071)
chr5 (85-216)||(17285804-17285935)
chr5 (87-242)||(22547062-22547217)
chr5 (87-190)||(31886537-31886640)
chr5 (85-216)||(17298957-17299088)
chr5 (107-196)||(33477390-33477479)
chr5 (1-45)||(19714742-19714786)
chr5 (1-45)||(24695709-24695753)
chr5 (147-241)||(18807081-18807175)
chr5 (1-45)||(19707462-19707506)
chr5 (1-45)||(27347722-27347766)
chr5 (131-196)||(11479420-11479486)
chr5 (3-45)||(18570108-18570150)
[»] chr3 (48 HSPs)
chr3 (81-242)||(8490488-8490649)
chr3 (83-242)||(18522665-18522824)
chr3 (81-242)||(6110064-6110225)
chr3 (81-242)||(10572638-10572799)
chr3 (81-242)||(18640792-18640953)
chr3 (83-242)||(16482529-16482688)
chr3 (87-242)||(17781164-17781319)
chr3 (84-242)||(13211305-13211463)
chr3 (83-241)||(13516813-13516971)
chr3 (81-242)||(13248607-13248768)
chr3 (81-242)||(15600930-15601091)
chr3 (81-242)||(15607475-15607636)
chr3 (87-242)||(19089791-19089946)
chr3 (81-242)||(15357632-15357793)
chr3 (87-242)||(10579401-10579556)
chr3 (83-238)||(17200234-17200389)
chr3 (83-242)||(18519980-18520136)
chr3 (87-242)||(32056946-32057101)
chr3 (87-239)||(1647570-1647726)
chr3 (100-242)||(15342265-15342407)
chr3 (81-242)||(29924971-29925132)
chr3 (81-242)||(29974124-29974285)
chr3 (83-242)||(16200128-16200286)
chr3 (83-242)||(16200434-16200592)
chr3 (88-235)||(24253441-24253589)
chr3 (83-144)||(18534758-18534819)
chr3 (83-128)||(18510924-18510969)
chr3 (187-242)||(17136465-17136520)
chr3 (1-45)||(6109984-6110028)
chr3 (1-45)||(8490408-8490452)
chr3 (1-45)||(13248527-13248571)
chr3 (1-45)||(13211223-13211267)
chr3 (1-45)||(17136149-17136193)
chr3 (1-45)||(18640989-18641033)
chr3 (2-45)||(18519898-18519941)
chr3 (1-38)||(10579604-10579641)
chr3 (1-38)||(17200434-17200471)
chr3 (1-45)||(16482727-16482770)
chr3 (3-45)||(32057144-32057186)
chr3 (1-38)||(10572841-10572878)
chr3 (1-45)||(15607672-15607717)
chr3 (1-45)||(1647768-1647812)
chr3 (1-45)||(13516731-13516775)
chr3 (1-45)||(15351237-15351281)
chr3 (1-45)||(15357829-15357873)
chr3 (1-33)||(17781370-17781402)
chr3 (1-45)||(18534675-18534719)
chr3 (1-33)||(19089997-19090029)
[»] scaffold0433 (2 HSPs)
scaffold0433 (81-242)||(7107-7268)
scaffold0433 (1-45)||(7027-7071)
[»] scaffold0234 (4 HSPs)
scaffold0234 (81-242)||(2367-2528)
scaffold0234 (81-242)||(11258-11419)
scaffold0234 (1-45)||(2564-2608)
scaffold0234 (1-45)||(11455-11499)
[»] chr7 (25 HSPs)
chr7 (81-242)||(29327784-29327945)
chr7 (81-242)||(11536108-11536269)
chr7 (83-238)||(18561009-18561164)
chr7 (81-242)||(11543026-11543187)
chr7 (83-242)||(15148144-15148303)
chr7 (83-242)||(15152445-15152604)
chr7 (83-241)||(12750828-12750986)
chr7 (87-242)||(12738542-12738697)
chr7 (83-227)||(18257903-18258047)
chr7 (87-235)||(13392157-13392304)
chr7 (103-226)||(2364917-2365040)
chr7 (87-174)||(39111819-39111905)
chr7 (1-45)||(12738455-12738499)
chr7 (114-228)||(7396221-7396336)
chr7 (155-196)||(3132748-3132789)
chr7 (1-45)||(2653275-2653319)
chr7 (1-45)||(11543223-11543267)
chr7 (1-45)||(12750745-12750789)
chr7 (1-45)||(15152362-15152406)
chr7 (131-230)||(10234179-10234278)
chr7 (1-44)||(29327702-29327745)
chr7 (81-113)||(2653207-2653239)
chr7 (1-45)||(11536305-11536349)
chr7 (1-45)||(15148061-15148105)
chr7 (110-160)||(29982995-29983045)
[»] chr4 (42 HSPs)
chr4 (81-242)||(19926806-19926967)
chr4 (81-242)||(5707320-5707481)
chr4 (81-242)||(10621379-10621540)
chr4 (81-242)||(10628458-10628619)
chr4 (81-242)||(26970463-26970624)
chr4 (81-242)||(55612683-55612844)
chr4 (83-242)||(28393180-28393339)
chr4 (81-242)||(5713948-5714109)
chr4 (81-242)||(26963640-26963801)
chr4 (81-242)||(868597-868758)
chr4 (83-242)||(4426650-4426808)
chr4 (83-242)||(18262214-18262373)
chr4 (93-241)||(8845215-8845363)
chr4 (93-241)||(8858179-8858327)
chr4 (83-242)||(18269070-18269234)
chr4 (81-196)||(12357136-12357251)
chr4 (89-242)||(20311299-20311453)
chr4 (87-232)||(10677609-10677753)
chr4 (87-232)||(10891249-10891393)
chr4 (87-235)||(5668178-5668327)
chr4 (87-174)||(35223576-35223663)
chr4 (83-164)||(5616215-5616296)
chr4 (107-235)||(21454190-21454319)
chr4 (1-45)||(868517-868561)
chr4 (1-45)||(5713868-5713912)
chr4 (1-45)||(19927003-19927047)
chr4 (1-45)||(26963560-26963604)
chr4 (1-45)||(26970383-26970427)
chr4 (1-45)||(5707240-5707284)
chr4 (1-45)||(10621576-10621620)
chr4 (1-45)||(12357056-12357100)
chr4 (1-45)||(17142372-17142416)
chr4 (1-45)||(55612606-55612650)
chr4 (2-45)||(4426847-4426890)
chr4 (130-196)||(39074279-39074346)
chr4 (1-43)||(28393380-28393422)
chr4 (1-45)||(10628655-10628699)
chr4 (131-190)||(11161913-11161972)
chr4 (4-45)||(5668371-5668412)
chr4 (5-45)||(18262136-18262176)
chr4 (5-45)||(18268992-18269032)
chr4 (1-45)||(55992685-55992729)
[»] chr1 (23 HSPs)
chr1 (81-242)||(18252030-18252191)
chr1 (81-242)||(27131455-27131616)
chr1 (81-242)||(18532560-18532721)
chr1 (83-239)||(16359084-16359240)
chr1 (83-242)||(27310623-27310782)
chr1 (83-242)||(21171279-21171438)
chr1 (87-242)||(36816679-36816834)
chr1 (81-242)||(3855965-3856126)
chr1 (81-234)||(22657275-22657429)
chr1 (115-196)||(12006631-12006712)
chr1 (115-232)||(12014340-12014457)
chr1 (87-235)||(27277610-27277756)
chr1 (1-45)||(18251948-18251992)
chr1 (1-45)||(18532757-18532801)
chr1 (93-235)||(9917971-9918106)
chr1 (111-188)||(3403248-3403325)
chr1 (111-188)||(3443494-3443571)
chr1 (1-45)||(27310821-27310865)
chr1 (87-156)||(30720625-30720694)
chr1 (1-45)||(16359280-16359324)
chr1 (3-45)||(21171479-21171521)
chr1 (1-38)||(36816885-36816922)
chr1 (1-45)||(3856164-3856208)
[»] scaffold0390 (4 HSPs)
scaffold0390 (81-242)||(13996-14157)
scaffold0390 (81-242)||(6980-7141)
scaffold0390 (1-45)||(7177-7221)
scaffold0390 (1-45)||(14193-14237)
[»] chr2 (7 HSPs)
chr2 (81-242)||(21330294-21330455)
chr2 (81-242)||(18796506-18796667)
chr2 (83-235)||(18619807-18619958)
chr2 (87-226)||(19692598-19692737)
chr2 (145-242)||(20977956-20978053)
chr2 (1-45)||(21330493-21330537)
chr2 (115-232)||(36270199-36270317)
[»] chr6 (26 HSPs)
chr6 (83-242)||(189023-189182)
chr6 (83-242)||(16566366-16566525)
chr6 (81-242)||(17691486-17691647)
chr6 (81-242)||(29308890-29309051)
chr6 (81-242)||(29315850-29316011)
chr6 (83-242)||(11651725-11651884)
chr6 (81-242)||(27381298-27381459)
chr6 (81-242)||(27471681-27471842)
chr6 (83-242)||(17684515-17684674)
chr6 (83-242)||(25537205-25537364)
chr6 (83-235)||(13359322-13359474)
chr6 (100-234)||(8509941-8510076)
chr6 (104-234)||(27925772-27925907)
chr6 (1-45)||(17691683-17691727)
chr6 (88-143)||(31258065-31258120)
chr6 (1-38)||(27381502-27381539)
chr6 (1-38)||(27471885-27471922)
chr6 (119-231)||(17850551-17850663)
chr6 (1-45)||(29308810-29308854)
chr6 (1-45)||(29315770-29315814)
chr6 (1-43)||(11651642-11651684)
chr6 (1-45)||(17684712-17684756)
chr6 (1-45)||(25537405-25537449)
chr6 (2-45)||(13359512-13359555)
chr6 (119-196)||(28605854-28605931)
chr6 (1-45)||(16566563-16566607)
[»] scaffold0657 (2 HSPs)
scaffold0657 (81-242)||(993-1154)
scaffold0657 (1-45)||(913-957)
[»] chr8 (16 HSPs)
chr8 (81-242)||(21940665-21940826)
chr8 (87-242)||(6094129-6094284)
chr8 (83-242)||(22171491-22171648)
chr8 (83-242)||(28554885-28555044)
chr8 (87-242)||(24642655-24642810)
chr8 (87-214)||(24636860-24636987)
chr8 (93-235)||(38232430-38232570)
chr8 (119-182)||(10920234-10920297)
chr8 (102-160)||(2375027-2375085)
chr8 (1-38)||(24642568-24642605)
chr8 (1-45)||(6094043-6094087)
chr8 (1-45)||(21940585-21940629)
chr8 (1-45)||(22070120-22070164)
chr8 (1-45)||(22171408-22171452)
chr8 (1-45)||(28554803-28554847)
chr8 (111-181)||(32872948-32873019)
[»] scaffold0220 (2 HSPs)
scaffold0220 (81-242)||(18288-18449)
scaffold0220 (1-45)||(18208-18252)
[»] scaffold0063 (2 HSPs)
scaffold0063 (83-242)||(5531-5690)
scaffold0063 (1-45)||(5448-5492)
[»] scaffold0186 (2 HSPs)
scaffold0186 (81-242)||(26036-26197)
scaffold0186 (1-44)||(26231-26274)
[»] scaffold0008 (2 HSPs)
scaffold0008 (83-242)||(230387-230545)
scaffold0008 (4-45)||(230584-230625)
[»] scaffold0176 (2 HSPs)
scaffold0176 (81-144)||(8447-8510)
scaffold0176 (1-45)||(8546-8590)
[»] scaffold0203 (1 HSPs)
scaffold0203 (1-45)||(23769-23813)
[»] scaffold0326 (2 HSPs)
scaffold0326 (1-37)||(16535-16571)
scaffold0326 (81-114)||(16615-16648)
[»] scaffold0565 (2 HSPs)
scaffold0565 (100-131)||(10127-10158)
scaffold0565 (3-45)||(10202-10244)
[»] scaffold0032 (1 HSPs)
scaffold0032 (110-182)||(92194-92267)
[»] scaffold0705 (1 HSPs)
scaffold0705 (1-45)||(41-85)
[»] scaffold0637 (1 HSPs)
scaffold0637 (5-45)||(8960-9000)


Alignment Details
Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 24695673 - 24695512
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24695673 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 24695574  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24695573 accccattaaacataatgaaactattctaaaagtatccgtagtcaagctttattgagaagtg 24695512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 18570070 - 18569909
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  18570070 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaattgaacattaagtataacttaattgtgag 18569971  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    ||||| |||||||||| ||||||| ||| |||||||| ||||||||||||||||||||||||    
T  18569970 accccgttaaacataaggaaactactcttaaagtatccgtagtcaagctttattgagaagtg 18569909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 83 - 241
Target Start/End: Complemental strand, 19714703 - 19714545
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19714703 aaggcatttctttattgattttgttttatttcaaagtaataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 19714604  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagt 241  Q
    ||| |||||||||| ||| ||||||| ||| |||| | |||||||||||||||||||||    
T  19714603 cccgttaaacataaggaatctattcttaaaatatccgaagtcaagctttattgagaagt 19714545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 87 - 241
Target Start/End: Complemental strand, 19707419 - 19707265
Alignment:
Q  87 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagacccca 186  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  19707419 catttctttattgattttgttttatttcaaagtaataaagtccctagaatagttagtcagtttaatggaacattaagtataacttaattgtgagaccccg 19707320  T
Q  187 ttaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagt 241  Q
    |||||||||| ||| ||||||| ||| |||| | |||||||||||||||||||||    
T  19707319 ttaaacataaggaatctattcttaaaatatccgaagtcaagctttattgagaagt 19707265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 86 - 235
Target Start/End: Complemental strand, 27347679 - 27347531
Alignment:
Q  86 gcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagacccc 185  Q
    |||||||||| |||||||||||||| |||||||||||||||||| ||||||| ||| ||||||||||||| |||||||| | ||||||| |||||| |||    
T  27347679 gcatttctttgttgattttgttttgattcaaaataataaagtccttagaataattaatctgtttaatggagcattaagtgtgacttaatcgtgaga-ccc 27347581  T
Q  186 attaaacataatgaaactattctaaaagtatctgtagtcaagctttattg 235  Q
    |||||||  || || | |||||| ||||||| ||||||||||||||||||    
T  27347580 attaaacgaaaggacattattcttaaagtatatgtagtcaagctttattg 27347531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 39537962 - 39538071
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    ||||| |||||||||| ||||||||||||||||||||||  | |||||| |||||||||| ||  |||||||||||||||||||||||||||||||||||    
T  39537962 acaagccatttctttaatgattttgttttgtttcaaaatggttaagtccttagaatagttggttcgtttaatggaacattaagtataacttaattgtgag 39538061  T
Q  181 accccattaa 190  Q
    ||| ||||||    
T  39538062 acctcattaa 39538071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 85 - 216
Target Start/End: Complemental strand, 17285935 - 17285804
Alignment:
Q  85 ggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagaccc 184  Q
    ||||||| ||||||||||||||| ||||||||||||||||  |||  ||||||||||||||||||||||||||||||||| | ||||||| |||| ||||    
T  17285935 ggcatttatttattgattttgttatgtttcaaaataataatctccagagaatagttagtctgtttaatggaacattaagtgtgacttaatcgtgaaaccc 17285836  T
Q  185 cattaaacataatgaaactattctaaaagtat 216  Q
     | |||||  ||||| | |||||| |||||||    
T  17285835 tagtaaactaaatgacattattcttaaagtat 17285804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 87 - 242
Target Start/End: Complemental strand, 22547217 - 22547062
Alignment:
Q  87 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagacccca 186  Q
    ||||| |||||| |||||||||| ||| |||||||||||  | ||| ||||||||||| ||||||||||||||||||||||||||||| |||||| | ||    
T  22547217 catttatttattcattttgttttattttaaaataataaaaccgctataatagttagtcggtttaatggaacattaagtataacttaatcgtgagatctca 22547118  T
Q  187 ttaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    ||||| |||  || | |||| | |||||||  | |||||| |||||||| ||||||    
T  22547117 ttaaatatatggacattatttttaaagtattcgcagtcaaactttattgtgaagtg 22547062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 87 - 190
Target Start/End: Original strand, 31886537 - 31886640
Alignment:
Q  87 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagacccca 186  Q
    |||||||||| |||||||||||||||||||| ||||||||||| ||||||| |||||   |||||| |||||| |||||  ||||||| ||||||| |||    
T  31886537 catttctttagtgattttgttttgtttcaaattaataaagtccttagaataattagttcatttaattgaacatcaagtacgacttaatcgtgagactcca 31886636  T
Q  187 ttaa 190  Q
    ||||    
T  31886637 ttaa 31886640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 216
Target Start/End: Complemental strand, 17299088 - 17298957
Alignment:
Q  85 ggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagaccc 184  Q
    ||||||| ||||||||||||||| |||||  |||||||||  |||  ||||||||||||| | |||||||||||||||||   ||||||| |||| ||||    
T  17299088 ggcatttatttattgattttgttatgtttataaataataatatccagagaatagttagtccgattaatggaacattaagtgcgacttaatcgtgaaaccc 17298989  T
Q  185 cattaaacataatgaaactattctaaaagtat 216  Q
     | |||||  ||||| | |||||| |||||||    
T  17298988 tagtaaactaaatgacattattcttaaagtat 17298957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 196
Target Start/End: Complemental strand, 33477479 - 33477390
Alignment:
Q  107 tttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagaccccattaaacataa 196  Q
    ||||||||||||||||||||||| || ||||||||| ||| |||||||| |||||||| | |  |||| |||||||| |||||| |||||    
T  33477479 tttgtttcaaaataataaagtccttacaatagttaggctgattaatggatcattaagtgtgatctaatcgtgagacctcattaatcataa 33477390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19714786 - 19714742
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  19714786 ccctaatagccaatctatattgattgggtttggctttgtatcatg 19714742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 24695753 - 24695709
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  24695753 ccctaatagccaatctatattgattgggtttggctttgtatcatg 24695709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 241
Target Start/End: Complemental strand, 18807175 - 18807081
Alignment:
Q  147 tttaatggaacattaagtataacttaattgtgagaccccattaaacataat-gaaactattctaaaagtatctgtagtcaagctttattgagaagt 241  Q
    |||||||||||||||||| | ||||||| ||||||| |||||||| ||||| || | |||||| ||||||||| ||||||||| |||||| |||||    
T  18807175 tttaatggaacattaagtgtgacttaatcgtgagacaccattaaa-ataatggacattattcttaaagtatctatagtcaagcgttattgtgaagt 18807081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19707506 - 19707462
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||    
T  19707506 ccctaatagccaatctatattgattgagtttggctttgtatcatg 19707462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27347766 - 27347722
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||    
T  27347766 ccctaatagccaatctatattgattgcgtttggctttgtatcatg 27347722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 11479420 - 11479486
Alignment:
Q  131 tagaatagttagtctgtttaatggaacattaagtataacttaattgtgagaccc-cattaaacataa 196  Q
    ||||||| ||||| ||||||||| || ||||||| | |||| |||||||||||| ||||||||||||    
T  11479420 tagaataattagtgtgtttaatgaaatattaagtgtgacttgattgtgagaccctcattaaacataa 11479486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 18570150 - 18570108
Alignment:
Q  3 ctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||| |||||||||| |||||||||||||||| ||||||    
T  18570150 ctaatagctaatctatattaattgggtttggctttgtatcatg 18570108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 48)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 8490488 - 8490649
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8490488 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 8490587  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||    
T  8490588 accccattaaacataaggaaactattctcaaagtatctgtagtcaagctttgttgagaagtg 8490649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 83 - 242
Target Start/End: Original strand, 18522665 - 18522824
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18522665 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 18522764  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  18522765 cccattaaacataaggaaactattcttaaagtatccgtagtcaagctttattgagaagtg 18522824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 6110064 - 6110225
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6110064 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 6110163  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||||||||| ||||||||||    
T  6110164 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtg 6110225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 10572799 - 10572638
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10572799 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 10572700  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||||||||| ||||||||||    
T  10572699 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtg 10572638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 18640953 - 18640792
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  18640953 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 18640854  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  18640853 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtg 18640792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 83 - 242
Target Start/End: Complemental strand, 16482688 - 16482529
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16482688 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 16482589  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||| ||||||| ||| |||||||| ||||||||||||||||||||||||    
T  16482588 cccattaaacataaggaaactactctcaaagtatccgtagtcaagctttattgagaagtg 16482529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 87 - 242
Target Start/End: Complemental strand, 17781319 - 17781164
Alignment:
Q  87 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagacccca 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17781319 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 17781220  T
Q  187 ttaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  17781219 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtg 17781164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 84 - 242
Target Start/End: Original strand, 13211305 - 13211463
Alignment:
Q  84 aggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagacc 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13211305 aggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacc 13211404  T
Q  184 ccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    ||||||||||||| ||||||||||| |||||||| ||||||||||||| ||||||||||    
T  13211405 ccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtg 13211463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 83 - 241
Target Start/End: Original strand, 13516813 - 13516971
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13516813 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttcatggaacattaagtataacttaattgtgagac 13516912  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagt 241  Q
    ||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||    
T  13516913 cccgttaaacataaggaaacgattcttaaagtatctgtagtcaagctttattgagaagt 13516971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 13248607 - 13248768
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  13248607 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 13248706  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||| ||||||||||| |||||||  ||||||||||||| ||||||||||    
T  13248707 accccattaaacataaggaaactattctcaaagtattcgtagtcaagctttgttgagaagtg 13248768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 15601091 - 15600930
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15601091 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 15600992  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||||||||| ||||||||||    
T  15600991 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtg 15600930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 15607636 - 15607475
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15607636 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 15607537  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||||||||| ||||||||||    
T  15607536 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtg 15607475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 87 - 242
Target Start/End: Complemental strand, 19089946 - 19089791
Alignment:
Q  87 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagacccca 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  19089946 catttctttattgattttgttttgtttcaaaataataaagtccctagattagttagtccgtttaatggaacattaagtataacttaattgtgagacccct 19089847  T
Q  187 ttaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  19089846 ttaaacataatgaaactattcttaaagtatccgtagtcaagctttattgagaagtg 19089791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 15357793 - 15357632
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  15357793 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagattagttagtccgtttaatggaacattaagtataacttaattgtgag 15357694  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||| ||| ||||||| |||||||| ||||||||||||||||||||||||    
T  15357693 accccattaaacataaggaacctattctcaaagtatccgtagtcaagctttattgagaagtg 15357632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 87 - 242
Target Start/End: Complemental strand, 10579556 - 10579401
Alignment:
Q  87 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagacccca 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  10579556 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgttaaatggaacattaagtataacttaattgtgagacccca 10579457  T
Q  187 ttaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||| ||||||||||    
T  10579456 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtg 10579401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 83 - 238
Target Start/End: Complemental strand, 17200389 - 17200234
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||    
T  17200389 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgatac 17200290  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgaga 238  Q
    ||| |||||||||||||||||||||| |||||||| ||||| ||||||||||||||    
T  17200289 ccctttaaacataatgaaactattcttaaagtatccgtagttaagctttattgaga 17200234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 83 - 242
Target Start/End: Original strand, 18519980 - 18520136
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18519980 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 18520079  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    ||| |||||||||| ||||||||||| ||   ||| ||||||||||||||||||||||||    
T  18520080 cccgttaaacataaggaaactattcttaa---atccgtagtcaagctttattgagaagtg 18520136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 87 - 242
Target Start/End: Complemental strand, 32057101 - 32056946
Alignment:
Q  87 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagacccca 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||     
T  32057101 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacatcaagtataactttattgtaagaccccg 32057002  T
Q  187 ttaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||| ||||||||||| ||||| || |||||||| |||||||||||||||    
T  32057001 ttaaacataaagaaactattcttaaagtgtccgtagtcaaactttattgagaagtg 32056946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 87 - 239
Target Start/End: Complemental strand, 1647726 - 1647570
Alignment:
Q  87 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagta----taacttaattgtgagac 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||    
T  1647726 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataattaacttaattgtgagac 1647627  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaa 239  Q
    ||| |||||||||| ||||||||| | |||||||| ||| |||||||||||||||||    
T  1647626 cccgttaaacataaggaaactatttttaaagtatccgtaatcaagctttattgagaa 1647570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 100 - 242
Target Start/End: Complemental strand, 15342407 - 15342265
Alignment:
Q  100 attttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagaccccattaaacataatga 199  Q
    ||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  15342407 attttgttttgtttcaaaataataaagtccctagaatagtttgttcgtttaatggaacattaagtataacttaattgtgagaccccattaaacataagga 15342308  T
Q  200 aactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    | ||||||| |||||||| ||||||||||||||||||||||||    
T  15342307 acctattctcaaagtatccgtagtcaagctttattgagaagtg 15342265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 29924971 - 29925132
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||  ||||||||||| |||||||||||    
T  29924971 acaagacatttctttattgattttgttttgtttcaaaataataaagcccctaaaatagttagtccgtttaatggattattaagtataatttaattgtgag 29925070  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    ||||||||||| |||| || | |||||| ||| ||| |||||||||||||||||| ||||||    
T  29925071 accccattaaatataaggacattattcttaaaatatatgtagtcaagctttattgtgaagtg 29925132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 29974124 - 29974285
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||  ||||||||||| |||||||||||    
T  29974124 acaagacatttctttattgattttgttttgtttcaaaataataaagcccctaaaatagttagtccgtttaatggattattaagtataatttaattgtgag 29974223  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    ||||||||||| |||| || | |||||| ||| ||| |||||||||||||||||| ||||||    
T  29974224 accccattaaatataaggacattattcttaaaatatatgtagtcaagctttattgtgaagtg 29974285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 83 - 242
Target Start/End: Original strand, 16200128 - 16200286
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    ||||||||||||  ||| |||| |||||||||||||||||||||||| |||||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  16200128 aaggcatttcttcgttg-ttttattttgtttcaaaataataaagtccttagaatagttagttcgtttaatggaacattatgtataacttaattgtgagac 16200226  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||| || | |||||| |||||||  ||||||||| ||||||| ||||||    
T  16200227 cccattaaacataaggacattattcttaaagtattcgtagtcaagatttattgtgaagtg 16200286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 83 - 242
Target Start/End: Original strand, 16200434 - 16200592
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    ||||||||||||  ||| |||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  16200434 aaggcatttcttcgttg-ttttattttgtttcaaaataataaagtccttagaatagttagtccgtttaatggaacattatgtataacttaattgtgagac 16200532  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
     ||| ||||||||| || | |||||| |||||||  ||||||||| ||||||| ||||||    
T  16200533 tccaataaacataaggacattattcttaaagtattcgtagtcaagatttattgtgaagtg 16200592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 88 - 235
Target Start/End: Complemental strand, 24253589 - 24253441
Alignment:
Q  88 atttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgaga-cccca 186  Q
    ||||||||||||||||||||||  |||||||||||||||||| |||||||| | ||  |||| |||||||||||||||| ||||||| |||||| |||||    
T  24253589 atttctttattgattttgttttacttcaaaataataaagtccttagaatagctcgttcgtttgatggaacattaagtatgacttaatcgtgagatcccca 24253490  T
Q  187 ttaaacataatgaaactattctaaaagtatctgtagtcaagctttattg 235  Q
    | |||||||| || |||||||| ||||||| ||| |||||  |||||||    
T  24253489 tcaaacataaggacactattcttaaagtatatgtggtcaaaatttattg 24253441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 18534758 - 18534819
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtc 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18534758 aaggcatttctttattgattttgttttgtttcaaaataataaagtccatagaatagttagtc 18534819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 18510924 - 18510969
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  18510924 aaggcatttctttattgattttgttttgtttcaaaataataaagtc 18510969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 17136465 - 17136520
Alignment:
Q  187 ttaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  17136465 ttaaacataaggaaactattcttaaagtatccgtagtcaagctttattgagaagtg 17136520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 6109984 - 6110028
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  6109984 ccctaatagccaatctatattgattgggtttggctttgtatcatg 6110028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8490408 - 8490452
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  8490408 ccctaatagccaatctatattgattgggtttggctttgtatcatg 8490452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13248527 - 13248571
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  13248527 ccctaatagccaatctatattgattgggtttggctttgtatcatg 13248571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13211223 - 13211267
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||    
T  13211223 ccctaatagccaatctatattgattgggtttggttttgtatcatg 13211267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 17136149 - 17136193
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||    
T  17136149 ccctaatagccaatctatattgattgagtttggctttgtatcatg 17136193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18641033 - 18640989
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||    
T  18641033 ccctaatagccaatctatattgattgtgtttggctttgtatcatg 18640989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 18519898 - 18519941
Alignment:
Q  2 cctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||||||||| |||| ||||||    
T  18519898 cctaatagccaatctatattgattgggtttggttttgtatcatg 18519941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10579641 - 10579604
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttg 38  Q
    |||||||||||||||||||||||||||||||| |||||    
T  10579641 ccctaatagccaatctatattgattgggtttgactttg 10579604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 17200471 - 17200434
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttg 38  Q
    |||||||||||||||||| |||||||||||||||||||    
T  17200471 ccctaatagccaatctatgttgattgggtttggctttg 17200434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16482770 - 16482727
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||    
T  16482770 ccctaata-ccaatctatattgattgggtttggctttgtatcatg 16482727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 32057186 - 32057144
Alignment:
Q  3 ctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||| ||||||||||||| ||||| ||||||    
T  32057186 ctaatagccaatctatgttgattgggtttgactttgtatcatg 32057144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10572878 - 10572841
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttg 38  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  10572878 ccctaatagccaacctatattgattgggtttgactttg 10572841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 15607717 - 15607672
Alignment:
Q  1 ccctaatagccaatctata-ttgattgggtttggctttgcatcatg 45  Q
    ||||||||||||||||||| || |||||||||||||||| ||||||    
T  15607717 ccctaatagccaatctatattttattgggtttggctttgtatcatg 15607672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1647812 - 1647768
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    ||||||||||   ||||||||||||||||||||||||| ||||||    
T  1647812 ccctaatagctggtctatattgattgggtttggctttgtatcatg 1647768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13516731 - 13516775
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||| ||||||| |||||||| || ||||||    
T  13516731 ccctaatagccaatctatgttgattgagtttggctgtgtatcatg 13516775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 15351281 - 15351237
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    ||||||||||||||||||| ||||||  |||||||||| ||||||    
T  15351281 ccctaatagccaatctataatgattgattttggctttgtatcatg 15351237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 15357873 - 15357829
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    ||||||||||||||||||| ||||||  |||||||||| ||||||    
T  15357873 ccctaatagccaatctataatgattgattttggctttgtatcatg 15357829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 17781402 - 17781370
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttgg 33  Q
    |||||||||||||||||||||||||| ||||||    
T  17781402 ccctaatagccaatctatattgattgagtttgg 17781370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 18534675 - 18534719
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    ||||||||| |||||||||||||||| |||||| |||| ||||||    
T  18534675 ccctaatagtcaatctatattgattgagtttggttttgtatcatg 18534719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 19090029 - 19089997
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttgg 33  Q
    |||||||||||||||||||||||||| ||||||    
T  19090029 ccctaatagccaatctatattgattgagtttgg 19089997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 7107 - 7268
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  7107 acaaggtatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatagaacattaagtataacttaattgtgag 7206  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7207 accccattaaacataatgaaactattctaaaagtatccgtagtcaagctttattgagaagtg 7268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 7027 - 7071
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  7027 ccctaatagccaatctatattgattgggtttggctttgcatcatg 7071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 146; Significance: 5e-77; HSPs: 4)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 2528 - 2367
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2528 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 2429  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  2428 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtg 2367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 11419 - 11258
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11419 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 11320  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  11319 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtg 11258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 2608 - 2564
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  2608 ccctaatagccaatctatattgattgggtttggctttgtatcatg 2564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 11499 - 11455
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  11499 ccctaatagccaatctatattgattgggtttggctttgtatcatg 11455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 29327784 - 29327945
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29327784 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtcagtttaatggaacattaagtataacttaattgtgag 29327883  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  29327884 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtg 29327945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 11536269 - 11536108
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  11536269 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtacaacttaattgtgag 11536170  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||| ||| ||||||| |||||||| ||||||||||||||||||||||||    
T  11536169 accccattaaacataaggaacctattctcaaagtatccgtagtcaagctttattgagaagtg 11536108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 83 - 238
Target Start/End: Original strand, 18561009 - 18561164
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18561009 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaactgtgagac 18561108  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgaga 238  Q
    ||| |||||||| | ||||||||||| |||||||||||||||||||||||||||||    
T  18561109 cccgttaaacattaggaaactattcttaaagtatctgtagtcaagctttattgaga 18561164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 11543187 - 11543026
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  11543187 acaatgcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtcag 11543088  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||| ||| ||||||| |||||||| ||||||||||||||||||||||||    
T  11543087 accccattaaacataaggaacctattctcaaagtatccgtagtcaagctttattgagaagtg 11543026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 83 - 242
Target Start/End: Original strand, 15148144 - 15148303
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||| || |||||||||||||||||||||||||||||    
T  15148144 aaggcatttctttattgagtttgttttgtttcaaaataataaagttcctagaatagttagtccgtttgattgaacattaagtataacttaattgtgagac 15148243  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    ||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  15148244 cccgttaaacataaggaaactattcttaaagtatctgtagtcaagctttattgagaagtg 15148303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 83 - 242
Target Start/End: Original strand, 15152445 - 15152604
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15152445 aaggcatttctttattgagtttgttttgtttcaaaataataaagttcctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 15152544  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    ||| |||||||||  ||||||||||| |||||||| ||||||||||||||||||||||||    
T  15152545 cccgttaaacatacggaaactattcttaaagtatccgtagtcaagctttattgagaagtg 15152604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 83 - 241
Target Start/End: Original strand, 12750828 - 12750986
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  12750828 aaggcatttctttattgattttgttttgtttcaaagtaataaagtccctagaatagttagtccgtttaatgaaacattaagtataacttaattgtgagac 12750927  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagt 241  Q
    | | |||||||||| ||||||||||| |||||||| |||||||||||||||||||||||    
T  12750928 ctcgttaaacataaagaaactattcttaaagtatccgtagtcaagctttattgagaagt 12750986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 87 - 242
Target Start/End: Original strand, 12738542 - 12738697
Alignment:
Q  87 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagacccca 186  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||       
T  12738542 catttctttattgattttattttgtttcaaaataataaagtccctagaatagttagtttgtttaatgaaacattaattataacttaattgtgagaccttg 12738641  T
Q  187 ttaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  12738642 ttaaacataaggaaactattcttaaagtatctgtagtcaagctttattgagaagtg 12738697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 83 - 227
Target Start/End: Complemental strand, 18258047 - 18257903
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  18258047 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaataattagtctgtttaatggaacattaagtatgacttaattgtgagac 18257948  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaag 227  Q
    ||||||||||| || || | |||||| |||||||| |||||||||    
T  18257947 cccattaaacacaaggacattattcttaaagtatccgtagtcaag 18257903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 87 - 235
Target Start/End: Original strand, 13392157 - 13392304
Alignment:
Q  87 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagacccca 186  Q
    ||||||||| |||| |||||||||||||||||||||||||| ||||||| | |||||||| |||||||| |||||||| | ||||||| |||||| ||||    
T  13392157 catttctttgttgactttgttttgtttcaaaataataaagttcctagaacaattagtctgcttaatggagcattaagtgtgacttaatcgtgaga-ccca 13392255  T
Q  187 ttaaacataatgaaactattctaaaagtatctgtagtcaagctttattg 235  Q
    |||||   || || | |||||| ||||||||  ||||||| ||||||||    
T  13392256 ttaaatgaaaggacattattcttaaagtatcaatagtcaaactttattg 13392304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 103 - 226
Target Start/End: Original strand, 2364917 - 2365040
Alignment:
Q  103 ttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagaccccattaaacataatgaaac 202  Q
    ||||| |||||||||||||||||||| |||||||| ||||||| | |||||||||||||||| |  |||||| |||||| ||||||||||  ||||| |     
T  2364917 ttgttatgtttcaaaataataaagtctctagaataattagtctttctaatggaacattaagtgtggcttaatcgtgagaacccattaaactaaatgacat 2365016  T
Q  203 tattctaaaagtatctgtagtcaa 226  Q
    |||||| ||| |||  ||||||||    
T  2365017 tattcttaaaatattcgtagtcaa 2365040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 87 - 174
Target Start/End: Original strand, 39111819 - 39111905
Alignment:
Q  87 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaat 174  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||||||||  |||| |||||||| |||||||||||  |||||||    
T  39111819 catttctttattaattttgttttatttcaaaa-aataaagtccctagaatagcgagtccgtttaatgaaacattaagtacgacttaat 39111905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12738455 - 12738499
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  12738455 ccctaatagccaatctatattgattgggtttggctttgtatcatg 12738499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 228
Target Start/End: Original strand, 7396221 - 7396336
Alignment:
Q  114 caaaataataaagtccctagaatagttagtctgtttaa-tggaacattaagtataacttaattgtgagaccccattaaacataatgaaactattctaaaa 212  Q
    |||||||| || ||| ||||||||||||||   ||||| ||||||||||||||| |||||||  |||||||| |||||||||||  ||| |||||| |||    
T  7396221 caaaataaaaatgtcgctagaatagttagttcatttaaatggaacattaagtatgacttaatcttgagaccctattaaacataagaaaattattcttaaa 7396320  T
Q  213 gtatctgtagtcaagc 228  Q
      || |||||||||||    
T  7396321 acatatgtagtcaagc 7396336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 3132748 - 3132789
Alignment:
Q  155 aacattaagtataacttaattgtgagaccccattaaacataa 196  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  3132748 aacattaagtgtaacttaattgtgagaccccattaaacataa 3132789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 2653319 - 2653275
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||    
T  2653319 ccctaatagccaatctatattgattgggattggctttgtatcatg 2653275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 11543267 - 11543223
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||    
T  11543267 ccctaatagccaatctatattgattggttttggctttgtatcatg 11543223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12750745 - 12750789
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||    
T  12750745 ccctaatagctaatctatattgattgggtttggctttgtatcatg 12750789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 15152362 - 15152406
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||    
T  15152362 ccctaatagccaatctatattgattgggtttggttttgtatcatg 15152406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 230
Target Start/End: Original strand, 10234179 - 10234278
Alignment:
Q  131 tagaatagttagtctgtttaatggaacattaagtataacttaattgtgagaccccattaaacataatgaaactattctaaaagtatctgtagtcaagctt 230  Q
    |||||||||||||| |||||||| | |||||| |||||||||||  |||||  ||||||||||||| || |||| | | ||| ||  |||||||||||||    
T  10234179 tagaatagttagtccgtttaatgaaccattaaatataacttaatcatgagattccattaaacataaagacactaatattaaaataaatgtagtcaagctt 10234278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 29327702 - 29327745
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcat 44  Q
    ||||||||||||||||||||||||||||||||| |||| |||||    
T  29327702 ccctaatagccaatctatattgattgggtttggttttgtatcat 29327745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 2653239 - 2653207
Alignment:
Q  81 acaaggcatttctttattgattttgttttgttt 113  Q
    |||||||||||||||||||||||||||||||||    
T  2653239 acaaggcatttctttattgattttgttttgttt 2653207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 11536349 - 11536305
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||| |||||||||||||| |||||||||| ||||||    
T  11536349 ccctaatagccactctatattgattggttttggctttgtatcatg 11536305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 15148061 - 15148105
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    ||||||||||||||||||||| ||||||||||| |||| ||||||    
T  15148061 ccctaatagccaatctatattaattgggtttggttttgtatcatg 15148105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 29982995 - 29983045
Alignment:
Q  110 gtttcaaaataataaagtccctagaatagttagtctgtttaatggaacatt 160  Q
    |||||||| ||||||||||  ||||| ||||| ||||||||||||||||||    
T  29982995 gtttcaaagtaataaagtctttagaacagttaatctgtttaatggaacatt 29983045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 19926967 - 19926806
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19926967 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 19926868  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  19926867 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtg 19926806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 5707320 - 5707481
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  5707320 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 5707419  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  5707420 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtg 5707481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 10621540 - 10621379
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  10621540 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctggaatagttagtccgtttaatggaacattaagtataacttaattgtgag 10621441  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    | |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  10621440 agcccattaaacataaggaaactattctcaaagtatctgtagtcaagctttattgagaagtg 10621379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 10628619 - 10628458
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  10628619 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctggaatagttagtccgtttaatggaacattaagtataacttaattgtgag 10628520  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    | |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  10628519 agcccattaaacataaggaaactattctcaaagtatctgtagtcaagctttattgagaagtg 10628458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 26970463 - 26970624
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26970463 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 26970562  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||||| ||||||||||||||    
T  26970563 accccattaaacataaggaaactattctcaaagtatccgtagtcaagatttattgagaagtg 26970624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 55612683 - 55612844
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  55612683 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 55612782  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||| ||||||| ||| |||||||| ||||||||||||||||||||||||    
T  55612783 accccattaaacataaggaaactactctcaaagtatccgtagtcaagctttattgagaagtg 55612844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 83 - 242
Target Start/End: Complemental strand, 28393339 - 28393180
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28393339 aaggcatttctttattgattttgatttgtttcaaaataataaagtccctaaaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 28393240  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  28393239 cccattaaacataaggaaactattcttaaagtatctgtagtcaagctttattgagaagtg 28393180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 5713948 - 5714109
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||    
T  5713948 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagcccatttaatggaacattaagtataacttaattgtgag 5714047  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  5714048 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtg 5714109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 26963640 - 26963801
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  26963640 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaaatataacttaattgtgag 26963739  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||||| ||||||||||||||    
T  26963740 accccattaaacataaggaaactattctcaaagtatccgtagtcaagatttattgagaagtg 26963801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 868597 - 868758
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  868597 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 868696  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    ||||| |||||||||| ||||||||||| |||||||| ||||||||||||| ||||||||||    
T  868697 accccgttaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtg 868758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 83 - 242
Target Start/End: Complemental strand, 4426808 - 4426650
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4426808 aaggcatttctttattgattttgttttgtttcaaaataataaagtccttagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 4426709  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    ||| |||||||||| | ||||||||| |||||||| ||||||||||||||||||||||||    
T  4426708 cccgttaaacataa-ggaactattcttaaagtatccgtagtcaagctttattgagaagtg 4426650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 83 - 242
Target Start/End: Original strand, 18262214 - 18262373
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18262214 aaggcatttctttattgattttgtttcgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 18262313  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    ||| |||||||||| ||||||||||| |||||||| |||||||||||||  |||||||||    
T  18262314 cccgttaaacataaggaaactattctcaaagtatccgtagtcaagctttgatgagaagtg 18262373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 93 - 241
Target Start/End: Original strand, 8845215 - 8845363
Alignment:
Q  93 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagaccccattaaac 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||    
T  8845215 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagatcccgttaaac 8845314  T
Q  193 ataatgaaactattctaaaagtatctgtagtcaagctttattgagaagt 241  Q
    |||| ||||||||||| |||||||| |||||||||||||||||||||||    
T  8845315 ataaggaaactattcttaaagtatccgtagtcaagctttattgagaagt 8845363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 93 - 241
Target Start/End: Original strand, 8858179 - 8858327
Alignment:
Q  93 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagaccccattaaac 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||    
T  8858179 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagatcccgttaaac 8858278  T
Q  193 ataatgaaactattctaaaagtatctgtagtcaagctttattgagaagt 241  Q
    |||| ||||||||||| |||||||| |||||||||||||||||||||||    
T  8858279 ataaggaaactattcttaaagtatccgtagtcaagctttattgagaagt 8858327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 83 - 242
Target Start/End: Original strand, 18269070 - 18269234
Alignment:
Q  83 aaggcatttctttattgatttt-----gttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgt 177  Q
    ||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18269070 aaggcatttctttattgattttgttttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgt 18269169  T
Q  178 gagaccccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||| |||||||||| ||||||||||| |||||||| |||||||||||||  |||||||||    
T  18269170 gagaccccgttaaacataaggaaactattctcaaagtatccgtagtcaagctttgatgagaagtg 18269234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 81 - 196
Target Start/End: Original strand, 12357136 - 12357251
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12357136 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 12357235  T
Q  181 accccattaaacataa 196  Q
    ||||||||||||||||    
T  12357236 accccattaaacataa 12357251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 89 - 242
Target Start/End: Original strand, 20311299 - 20311453
Alignment:
Q  89 tttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaag-tataacttaattgtgagaccccat 187  Q
    ||||||||||||||||||||||||| ||||||||||||| | || |||||||| | |||| |||||| ||||||| ||||||||||||||||||||||||    
T  20311299 tttctttattgattttgttttgttttaaaataataaagtacttataatagttaatatgttcaatggagcattaaggtataacttaattgtgagaccccat 20311398  T
Q  188 taaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    ||||||||| || ||| || | ||||||| ||| |||||||||||||| ||||||    
T  20311399 taaacataaggacactgtttttaaagtatttgttgtcaagctttattgtgaagtg 20311453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 87 - 232
Target Start/End: Complemental strand, 10677753 - 10677609
Alignment:
Q  87 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagacccca 186  Q
    ||||| |||||||||||| ||||||||||| | ||||||| ||||| |||| ||||||||| ||||||| |||||||||| ||||||| | |||| ||||    
T  10677753 catttttttattgattttcttttgtttcaataaaataaagcccctaaaataattagtctgtataatggagcattaagtatgacttaatcgcgaga-ccca 10677655  T
Q  187 ttaaacataatgaaactattctaaaagtatctgtagtcaagcttta 232  Q
    ||||||  ||||| | |||||| |||||||| ||||||||||||||    
T  10677654 ttaaacgaaatgatattattcttaaagtatccgtagtcaagcttta 10677609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 87 - 232
Target Start/End: Complemental strand, 10891393 - 10891249
Alignment:
Q  87 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagacccca 186  Q
    ||||| |||||||||||| ||||||||||| | ||||||| ||||| |||| ||||||||| ||||||| |||||||||| ||||||| | |||| ||||    
T  10891393 catttttttattgattttcttttgtttcaataaaataaagcccctaaaataattagtctgtataatggagcattaagtatgacttaatcgcgaga-ccca 10891295  T
Q  187 ttaaacataatgaaactattctaaaagtatctgtagtcaagcttta 232  Q
    ||||||  ||||| | |||||| |||||||| ||||||||||||||    
T  10891294 ttaaacgaaatgatattattcttaaagtatccgtagtcaagcttta 10891249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 87 - 235
Target Start/End: Complemental strand, 5668327 - 5668178
Alignment:
Q  87 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagacccca 186  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||| |||||||| | | ||||| |||||| ||||    
T  5668327 catttctttgttgattttgttttgtttcaaaataataaagtctctagaataattagtctatttaatggagcattaagtgtgatttaatcgtgaga-ccca 5668229  T
Q  187 ttaaacataatgaaactattctaaaag--tatctgtagtcaagctttattg 235  Q
    |||||   || || | |||||| ||||  ||| ||||||||||||||||||    
T  5668228 ttaaatgaaaggacattattcttaaagtatatttgtagtcaagctttattg 5668178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 87 - 174
Target Start/End: Original strand, 35223576 - 35223663
Alignment:
Q  87 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaat 174  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| | |||||||    
T  35223576 catttctttgttgattttgttttgttttaaaataataaagtccctagaataattagtctgtttaatggagcattaagtgtgacttaat 35223663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 5616215 - 5616296
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagt 164  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||| |||| ||||||| |||  |||||||||||||    
T  5616215 aaggcatttctttattcattttgttttgtttcaaaataataaagttcctaaaataattagtctatttcttggaacattaagt 5616296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 235
Target Start/End: Complemental strand, 21454319 - 21454190
Alignment:
Q  107 tttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacatt-aagtataacttaattgtgagaccccattaaacataatgaaactat 205  Q
    ||||||||||| ||||||||| | ||||||||||||| || ||||||||||||| || | | |||||||  ||||||||||||||  ||||||| | |||    
T  21454319 tttgtttcaaagtaataaagttcttagaatagttagtttgattaatggaacattaaaatgtgacttaatattgagaccccattaattataatgacattat 21454220  T
Q  206 tctaaaagtatctgtagtcaagctttattg 235  Q
    | | ||| ||||| ||||||| ||||||||    
T  21454219 ttttaaaatatctatagtcaaactttattg 21454190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 868517 - 868561
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  868517 ccctaatagccaatctatattgattgggtttggctttgtatcatg 868561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5713868 - 5713912
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  5713868 ccctaatagccaatctatattgattgggtttggctttgtatcatg 5713912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19927047 - 19927003
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  19927047 ccctaatagccaatctatattgattgggtttggctttgtatcatg 19927003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 26963560 - 26963604
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  26963560 ccctaatagccaatctatattgattgggtttggctttgtatcatg 26963604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 26970383 - 26970427
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  26970383 ccctaatagccaatctatattgattgggtttggctttgtatcatg 26970427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5707240 - 5707284
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||    
T  5707240 ccctaatagccaatctatattgattgtgtttggctttgtatcatg 5707284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 10621620 - 10621576
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||    
T  10621620 ccctaatagccaatctatattgattggttttggctttgtatcatg 10621576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12357056 - 12357100
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||    
T  12357056 ccctaatagccaatctatattgattggatttggctttgtatcatg 12357100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 17142416 - 17142372
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||    
T  17142416 ccctaatagccaatctatattgattgggtttgactttgtatcatg 17142372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 55612606 - 55612650
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||    
T  55612606 ccctaataaccaatctatattgattgggtttggctttgtatcatg 55612650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 4426890 - 4426847
Alignment:
Q  2 cctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||||||||||| || ||||||    
T  4426890 cctaatagccaatctatattgattgggtttggctctgtatcatg 4426847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 39074346 - 39074279
Alignment:
Q  130 ctagaatagttagtctgtttaa-tggaacattaagtataacttaattgtgagaccccattaaacataa 196  Q
    |||||||| |||||| |||||| | ||||||||||||| |||||||  ||||||||||||||||||||    
T  39074346 ctagaataattagtccgtttaaattgaacattaagtatgacttaatcatgagaccccattaaacataa 39074279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 28393422 - 28393380
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatca 43  Q
    |||||||||||||||||||||||||||||||| ||||| ||||    
T  28393422 ccctaatagccaatctatattgattgggtttgactttgtatca 28393380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 10628699 - 10628655
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    ||||||||||||||||||||||||||| |||| ||||| ||||||    
T  10628699 ccctaatagccaatctatattgattggttttgactttgtatcatg 10628655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 11161972 - 11161913
Alignment:
Q  131 tagaatagttagtctgtttaatggaacattaagtataacttaattgtgagaccccattaa 190  Q
    ||||||||||| || |||||||||||||  |||| | ||||||||||||||| |||||||    
T  11161972 tagaatagttaatcagtttaatggaacacaaagtgtgacttaattgtgagactccattaa 11161913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 5668412 - 5668371
Alignment:
Q  4 taatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    ||||||||||||||||||||||| |||||| |||| ||||||    
T  5668412 taatagccaatctatattgattgtgtttggttttgtatcatg 5668371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 18262136 - 18262176
Alignment:
Q  5 aatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||| |||| |||||||||||||| ||||||    
T  18262136 aatagccaatctatgttgaatgggtttggctttgtatcatg 18262176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 18268992 - 18269032
Alignment:
Q  5 aatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||| |||| |||||||||||||| ||||||    
T  18268992 aatagccaatctatgttgaatgggtttggctttgtatcatg 18269032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 55992685 - 55992729
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||| | ||||||||||||||| ||||| ||||||    
T  55992685 ccctaatagccaatttgtattgattgggtttgactttgtatcatg 55992729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 18252030 - 18252191
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18252030 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 18252129  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  18252130 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtg 18252191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 27131616 - 27131455
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27131616 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 27131517  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||    
T  27131516 accccattaaacataaggaaactattctcaaagtatttgtagtcaagctttattgagaagtg 27131455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 18532721 - 18532560
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  18532721 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagttcgtttaatggaacattaagtataacttaattgtgag 18532622  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||||||||| ||||||||||    
T  18532621 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtg 18532560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 83 - 239
Target Start/End: Complemental strand, 16359240 - 16359084
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  16359240 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagaataacttaattgtgagac 16359141  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaa 239  Q
    ||| |||||||||| ||||||||||| |||||| |  ||||||||||||||||||||    
T  16359140 cccgttaaacataaggaaactattcttaaagtaaccctagtcaagctttattgagaa 16359084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 83 - 242
Target Start/End: Complemental strand, 27310782 - 27310623
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27310782 aaggcatttctttattgattttgttttgtttcaaaataataaagtccttagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 27310683  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    | | || ||||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  27310682 cacgttgaacataaggaaactattcttaaagtatcagtagtcaagctttattgagaagtg 27310623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 83 - 242
Target Start/End: Complemental strand, 21171438 - 21171279
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||| |||||||||||||||||||    
T  21171438 aaggcatttctttattgattttgttttgtttcaaaataataaagtccttagaatagttagtccgtttcatggaacattaaatataacttaattgtgagac 21171339  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    ||| || ||||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  21171338 cccgttgaacataaggaaactattcttaaagtatccgtagtcaagctttattgagaagtg 21171279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 87 - 242
Target Start/End: Complemental strand, 36816834 - 36816679
Alignment:
Q  87 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagacccca 186  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||     
T  36816834 catttctttattgattttgttttgtttcaaaataatgaagtccctagaatagttcgtctgtttaatggaacattaagtataaattaattgtgagactccg 36816735  T
Q  187 ttaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||| || | |||||| ||||||||  |||||||||||||||||||||||    
T  36816734 ttaaacataaggacattattcttaaagtatccatagtcaagctttattgagaagtg 36816679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 3856126 - 3855965
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    ||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  3856126 acaaggcatttctttgtttattttgttttgtttcaaaataacaaagtccctagaatagttagcccgtttaatggaacattaagtataacttaattgtgag 3856027  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||| || | |||||| ||| ||| ||||||||| |||||||| ||||||    
T  3856026 accccattaaacataaggacattattcttaaaatatttgtagtcaaactttattgtgaagtg 3855965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 81 - 234
Target Start/End: Complemental strand, 22657429 - 22657275
Alignment:
Q  81 acaaggcatttctttattgatttt-gttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtga 179  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22657429 acaagacatttctttattgatttttgttttgtttcaaaataataaagttcctagaatagttagtctgtttaatggaacattaaatataacttaattgtga 22657330  T
Q  180 gaccccattaaacataatgaaactattctaaaagtatctgtagtcaagctttatt 234  Q
    |||||| |||||||||| || || ||||| ||||| ||| |||||||||||||||    
T  22657329 gacccctttaaacataaggacacaattcttaaagtgtctctagtcaagctttatt 22657275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 12006712 - 12006631
Alignment:
Q  115 aaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagaccccattaaacataa 196  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||| |  |||||| |||||||||||| ||||||||    
T  12006712 aaaataataaagtccctagaatagttagtctatttaatggaatattaagtgtgccttaatcgtgagaccccatgaaacataa 12006631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 232
Target Start/End: Complemental strand, 12014457 - 12014340
Alignment:
Q  115 aaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagaccccattaaacataatgaaactattctaaaagt 214  Q
    |||||||||||||| ||||||||  ||||| ||||||||||| ||||||| ||| ||||| || ||| |||||||||||||||||   |||||| |||      
T  12014457 aaaataataaagtcactagaatacatagtccgtttaatggaatattaagtgtaaattaatcgttagatcccattaaacataatgatgttattcttaaaac 12014358  T
Q  215 atctgtagtcaagcttta 232  Q
    ||| ||||| ||||||||    
T  12014357 atccgtagttaagcttta 12014340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 87 - 235
Target Start/End: Complemental strand, 27277756 - 27277610
Alignment:
Q  87 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagacccca 186  Q
    ||||||||| ||| |||||||||||||||||||||||| |||||||||||| ||||||  ||||| ||| |||| ||| | ||||||| | |||| ||      
T  27277756 catttctttgttgtttttgttttgtttcaaaataataacgtccctagaataattagtccatttaacggagcatt-agtgtgacttaatcgcgaga-cctt 27277659  T
Q  187 ttaaacataatgaaactattctaaaagtatctgtagtcaagctttattg 235  Q
    |||| |  ||||| | |||||| |||||||| ||||||| |||||||||    
T  27277658 ttaaccgaaatgacattattcttaaagtatccgtagtcaggctttattg 27277610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 18251948 - 18251992
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  18251948 ccctaatagccaatctatattgattgggtttggctttgtatcatg 18251992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18532801 - 18532757
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  18532801 ccctaatagccaatctatattgattgggtttggctttgtatcatg 18532757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 93 - 235
Target Start/End: Complemental strand, 9918106 - 9917971
Alignment:
Q  93 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagaccccattaaac 192  Q
    |||||||||||||||||||| ||||||||||||||| ||       ||||| |||||||| |||||||||||||||||| ||   ||||  ||||||||     
T  9918106 tttattgattttgttttgttacaaaataataaagtcact------tttagtttgtttaatcgaacattaagtataacttgatcacgaga-tccattaaat 9918014  T
Q  193 ataatgaaactattctaaaagtatctgtagtcaagctttattg 235  Q
    |||| || | |||||| ||| ||||| |||| |||||||||||    
T  9918013 ataaggacattattcttaaaatatctatagttaagctttattg 9917971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 3403248 - 3403325
Alignment:
Q  111 tttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagaccccatt 188  Q
    ||||||| ||||||||||  || ||||||||||||| ||||||||| ||||||| | |||||| ||||||||| ||||    
T  3403248 tttcaaagtaataaagtctataaaatagttagtctgattaatggaatattaagtgtgacttaaatgtgagaccacatt 3403325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 3443571 - 3443494
Alignment:
Q  111 tttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagaccccatt 188  Q
    ||||||| ||||||||||  || ||||||||||||| ||||||||| ||||||| | |||||| ||||||||| ||||    
T  3443571 tttcaaagtaataaagtctataaaatagttagtctgattaatggaatattaagtgtgacttaaatgtgagaccacatt 3443494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27310865 - 27310821
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||    
T  27310865 ccctaatagccaatctatattgattgagtttggctttgtatcatg 27310821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 30720694 - 30720625
Alignment:
Q  87 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaa 156  Q
    ||||| ||||||| |||| |||||||| ||||||||||||| ||| ||||| |||||  |||||||||||    
T  30720694 catttttttattggttttattttgttttaaaataataaagttcctggaataattagttcgtttaatggaa 30720625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16359324 - 16359280
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||||||| || |||| ||||||    
T  16359324 ccctaatagccaatctatattgattgggttaggatttgtatcatg 16359280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 21171521 - 21171479
Alignment:
Q  3 ctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||    
T  21171521 ctaatagccaatctatatggattgagtttggctttgtatcatg 21171479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 36816922 - 36816885
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttg 38  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  36816922 ccctaatattcaatctatattgattgggtttggctttg 36816885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3856208 - 3856164
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    ||||||||||||||| || ||||||||||||| ||||| ||||||    
T  3856208 ccctaatagccaatccatcttgattgggtttgactttgtatcatg 3856164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 14157 - 13996
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||    
T  14157 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctacaatagttagtccgtttaatggaacattaagtataacttaactgtgag 14058  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  14057 accccattaaacataaggaaactattctcaaagtatctgtagtcaagctttattgagaagtg 13996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 7141 - 6980
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  7141 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaactgtgag 7042  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  7041 accctattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtg 6980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 7221 - 7177
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||| |||||| |||| ||||||    
T  7221 ccctaatagccaatctatattgattgagtttggttttgtatcatg 7177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 14237 - 14193
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||| |||||| |||| ||||||    
T  14237 ccctaatagccaatctatattgattgagtttggttttgtatcatg 14193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 21330455 - 21330294
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21330455 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 21330356  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  21330355 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtg 21330294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 18796506 - 18796667
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    |||||| |||| ||| || |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18796506 acaaggaatttatttgtttattttgttttgtttcaaaataacaaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 18796605  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    ||| | || ||||||| || | |||||| ||| |||||||||||||||||||||| ||||||    
T  18796606 acctcttttaacataaggatattattcttaaattatctgtagtcaagctttattgtgaagtg 18796667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 83 - 235
Target Start/End: Original strand, 18619807 - 18619958
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| | |||||||| |||||     
T  18619807 aaggaatttctttgttgattttgttttgtttcaaaataataaagtccctataataattagtctgtttaatggagcattaagtgtgacttaattatgaga- 18619905  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattg 235  Q
    ||||||||||| || || | |||||| ||||||||||| ||||| ||||||||    
T  18619906 cccattaaacaaaaggatattattcttaaagtatctgtggtcaaactttattg 18619958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 87 - 226
Target Start/End: Complemental strand, 19692737 - 19692598
Alignment:
Q  87 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagacccca 186  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||  | |||||||  ||||| | ||    
T  19692737 catttctttattgattttgttttgtttcaaaataatgaagtccctagaataattagtctgtttaatggaacattaagcctgacttaatcatgagatctca 19692638  T
Q  187 ttaaacataatgaaactattctaaaagtatctgtagtcaa 226  Q
    ||||||  || |||| |||||| ||||||||  |||||||    
T  19692637 ttaaactaaaggaaattattcttaaagtatccttagtcaa 19692598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 242
Target Start/End: Original strand, 20977956 - 20978053
Alignment:
Q  145 tgtttaatggaacattaagtataacttaattgtgagaccccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    ||||||||||||||||||| |||| |||||  ||||| ||||||||| |||| |||| |||||| |||  ||| |||||||||||||| || ||||||    
T  20977956 tgtttaatggaacattaagaataatttaatcatgagatcccattaaaaataaggaaattattcttaaaacatccgtagtcaagctttaatgtgaagtg 20978053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 21330537 - 21330493
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  21330537 ccctaatagccaatctatattgattgggtttggctttgtatcatg 21330493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 232
Target Start/End: Original strand, 36270199 - 36270317
Alignment:
Q  115 aaaataataaagtccctagaatagttagtct-gtttaatggaacattaagtataacttaattgtgagaccccattaaacataatgaaactattctaaaag 213  Q
    ||||||||||||||||||||||||||||| |  || |||| ||  |||||| | ||||||| |||||||  ||||||||| ||||| |||||||| |||     
T  36270199 aaaataataaagtccctagaatagttagtttacttaaatgaaatgttaagtgtgacttaatcgtgagacatcattaaacacaatgacactattcttaaaa 36270298  T
Q  214 tatctgtagtcaagcttta 232  Q
     ||| ||| ||||||||||    
T  36270299 catccgtaatcaagcttta 36270317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 83 - 242
Target Start/End: Complemental strand, 189182 - 189023
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  189182 aaggcatttctttattgattttgttttgtttcaaaataataaagtccttagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 189083  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||    
T  189082 cccattaaacataaggaaactattcttaaagtatttgtagtcaagctttattgagaagtg 189023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 83 - 242
Target Start/End: Complemental strand, 16566525 - 16566366
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16566525 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 16566426  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    ||| |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  16566425 cccgttaaacataaggaaactattcttaaagtatccgtagtcaagctttattgagaagtg 16566366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 17691647 - 17691486
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17691647 acaaggcatttctttattgattttgttttctttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 17691548  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||    
T  17691547 accccattaaacataaggaaactattcttaaagtatccgtagtcaagctttagtgagaagtg 17691486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 29308890 - 29309051
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  29308890 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 29308989  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    | |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  29308990 agcccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtg 29309051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 29315850 - 29316011
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  29315850 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 29315949  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    | |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  29315950 agcccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtg 29316011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 83 - 242
Target Start/End: Original strand, 11651725 - 11651884
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11651725 aaggcatttctttattgattttgatttgtttcaaaataataaagtccctaaaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 11651824  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    ||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  11651825 cccattaaaaataaggaaactattctaaaagtatcagtagtcaagctttattgagaagtg 11651884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 27381459 - 27381298
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27381459 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 27381360  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||  ||||||||||| ||||||||  |||||||||||| ||||||||||    
T  27381359 accccattaaacatatggaaactattctcaaagtatccatagtcaagctttgttgagaagtg 27381298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 27471842 - 27471681
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27471842 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 27471743  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||  ||||||||||| ||||||||  |||||||||||| ||||||||||    
T  27471742 accccattaaacatatggaaactattctcaaagtatccatagtcaagctttgttgagaagtg 27471681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 83 - 242
Target Start/End: Complemental strand, 17684674 - 17684515
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17684674 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 17684575  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    ||| |||||||||| ||||||||||| |||||||| |||||||||||||  |||||||||    
T  17684574 cccgttaaacataaggaaactattctcaaagtatccgtagtcaagctttgatgagaagtg 17684515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 83 - 242
Target Start/End: Complemental strand, 25537364 - 25537205
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||    
T  25537364 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaataattagtccgtttaatggaacattaagtataactttattgtgagac 25537265  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    ||| |||||||||| ||||||||||| |||||||  ||||||||||||||||||||||||    
T  25537264 cccgttaaacataaggaaactattcttaaagtattcgtagtcaagctttattgagaagtg 25537205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 83 - 235
Target Start/End: Complemental strand, 13359474 - 13359322
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||  | |||||||| |||||||||||||||||| |||| ||    
T  13359474 aaggcatttatttatttattttgttttgtttcaaaataataaagtccctagaatagttagttcgcttaatggagcattaagtataacttaatcgtgaaac 13359375  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattg 235  Q
     |||||||||||||  | | |||| | |||||||| |||||||| ||||||||    
T  13359374 tccattaaacataaaaacattatttttaaagtatccgtagtcaacctttattg 13359322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 234
Target Start/End: Original strand, 8509941 - 8510076
Alignment:
Q  100 attttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgaga-ccccattaaacataatg 198  Q
    ||||| |||||||| ||||||||||||||  ||||||| ||||||| ||| ||||||||||| |||  |||||||| ||||| |||||||||| || | |    
T  8509941 attttattttgttttaaaataataaagtctatagaataattagtctatttgatggaacattatgtacgacttaattatgagacccccattaaatatgagg 8510040  T
Q  199 aaactattctaaaagtatctgtagtcaagctttatt 234  Q
    |   |||| | ||||||| |||||| ||||||||||    
T  8510041 atgatattattaaagtatatgtagttaagctttatt 8510076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 234
Target Start/End: Original strand, 27925772 - 27925907
Alignment:
Q  104 tgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaac---attaa--gtataacttaattgtgagaccccattaaacataatg 198  Q
    |||||||||||||||||||||||||| |||||||  |||| ||||||| |||||   |||||  || | ||||||| ||||||| |||||||||  ||      
T  27925772 tgttttgtttcaaaataataaagtccttagaataactagtatgtttaacggaacataattaagtgtgtgacttaatcgtgagactccattaaactaaaga 27925871  T
Q  199 aaactattctaaaagtatctgtagtcaagctttatt 234  Q
    ||| |||||| ||||||||| ||||||| |||||||    
T  27925872 aaattattcttaaagtatctctagtcaaactttatt 27925907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 17691727 - 17691683
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  17691727 ccctaatagccaatctatattgattgggtttggctttgtatcatg 17691683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 31258120 - 31258065
Alignment:
Q  88 atttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagt 143  Q
    |||||||||||| |||||||||||||||||||||||||||| ||| |||| |||||    
T  31258120 atttctttattgcttttgttttgtttcaaaataataaagtctctaaaataattagt 31258065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27381539 - 27381502
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttg 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27381539 ccctaatagccaatctatattgattgggtttggctttg 27381502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27471922 - 27471885
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttg 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27471922 ccctaatagccaatctatattgattgggtttggctttg 27471885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 231
Target Start/End: Complemental strand, 17850663 - 17850551
Alignment:
Q  119 taataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagaccccattaaacataatgaaactattctaaaagtatct 218  Q
    |||||||||||||| ||||| |||| |||||  |||||||||| |||  |||||||||||| | || |||||| | || || |||||||| ||| ||||     
T  17850663 taataaagtccctataatagctagtttgtttgttggaacattatgtaagacttaattgtgatatccaattaaaaacaaggacactattcttaaattatcc 17850564  T
Q  219 gtagtcaagcttt 231  Q
     ||||||||||||    
T  17850563 atagtcaagcttt 17850551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 29308810 - 29308854
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||    
T  29308810 ccctaatagccaatctatattgattggttttggctttgtatcatg 29308854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 29315770 - 29315814
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||    
T  29315770 ccctaatagccaatctatattgattggttttggctttgtatcatg 29315814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 11651642 - 11651684
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatca 43  Q
    |||||||||||||||||||||||||| ||||||||||| ||||    
T  11651642 ccctaatagccaatctatattgattgagtttggctttgtatca 11651684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 17684756 - 17684712
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||| |||| |||||||||||||| ||||||    
T  17684756 ccctaatagccaatctatgttgaatgggtttggctttgtatcatg 17684712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 25537449 - 25537405
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    ||||||||||||||||||||||| || ||||||||||| ||||||    
T  25537449 ccctaatagccaatctatattgactgagtttggctttgtatcatg 25537405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 13359555 - 13359512
Alignment:
Q  2 cctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||| |||||||||| ||||| ||||||    
T  13359555 cctaatagccaatctatattcattgggtttgactttgtatcatg 13359512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 28605854 - 28605931
Alignment:
Q  119 taataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagaccccattaaacataa 196  Q
    |||||||||  |||||||||||| | |||||||||| || |||||| | ||| |||||||||||| | ||||| ||||    
T  28605854 taataaagtatctagaatagttattttgtttaatgggactttaagtgtgactaaattgtgagacctcgttaaagataa 28605931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16566607 - 16566563
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||| ||||||| ||||| ||||| ||||||    
T  16566607 ccctaatagccaatctatgttgattgagtttgactttgtatcatg 16566563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 993 - 1154
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||    
T  993 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctaaaatagttagtccgtttaatgaaacattaagtataacttaattgtgag 1092  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  1093 accccattaaacataaagaaactattctcaaagtatctgtagtcaagctttattgagaagtg 1154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 913 - 957
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  913 ccctaatagccaatctatattgattgggtttggctttgtatcatg 957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 21940665 - 21940826
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21940665 acaatgcatttctttattgattttgttttgtttcaaaataataaagttcctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 21940764  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  21940765 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtg 21940826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 87 - 242
Target Start/End: Original strand, 6094129 - 6094284
Alignment:
Q  87 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagacccca 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  6094129 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccg 6094228  T
Q  187 ttaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||| ||||||||| | |||||||||||||||||||||||||||||||||    
T  6094229 ttaaacataaggaaactatttttaaagtatctgtagtcaagctttattgagaagtg 6094284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 83 - 242
Target Start/End: Original strand, 22171491 - 22171648
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22171491 aaggcatttccttattgattttgttttatttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 22171590  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||  ||||||||||| |||||||| ||||||||||||||||||||||||    
T  22171591 cccattaaacata--gaaactattctcaaagtatccgtagtcaagctttattgagaagtg 22171648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 83 - 242
Target Start/End: Original strand, 28554885 - 28555044
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    |||||||||||||||||||||||||| |||||||||||||||| | |||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28554885 aaggcatttctttattgattttgtttagtttcaaaataataaaatacctaaaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 28554984  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  28554985 cccattaaacataatgaaactattctaaaagtatccgtagtcaagctttgttgagaagtg 28555044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 87 - 242
Target Start/End: Original strand, 24642655 - 24642810
Alignment:
Q  87 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagacccca 186  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||     
T  24642655 catttctttattgattttgttttgtttcaaaatcataaagtccctagaattgttagtccgtttaatggaacattaagtataacttaattgtgagaccccg 24642754  T
Q  187 ttaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||| ||||||||||| |||||||  ||||||||||||||||||||||||    
T  24642755 ttaaacataaggaaactattcttaaagtattcgtagtcaagctttattgagaagtg 24642810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 87 - 214
Target Start/End: Original strand, 24636860 - 24636987
Alignment:
Q  87 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagacccca 186  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||     
T  24636860 catttctttcttgattttgttttgtttcaaaataataaagtccctagaatagttagtccttttaatggaacattaagtataacttaattgtgagaccccg 24636959  T
Q  187 ttaaacataatgaaactattctaaaagt 214  Q
    |||||||||| ||||||||||| |||||    
T  24636960 ttaaacataaggaaactattcttaaagt 24636987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 235
Target Start/End: Complemental strand, 38232570 - 38232430
Alignment:
Q  93 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagaccccattaaac 192  Q
    ||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||  |   ||| ||||||||||||  ||| || |||||||||    
T  38232570 tttattgattttgttttatttcaaaataataaa-tctctagaatagttagtctgtttaataaatttttaggtataacttaatcatgacactccattaaac 38232472  T
Q  193 ataatgaaactattctaaaagtatctgtagtcaagctttattg 235  Q
     |||  | | |||||| ||||||| ||||||||| ||||||||    
T  38232471 gtaa-aatagtattcttaaagtatttgtagtcaaactttattg 38232430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 10920234 - 10920297
Alignment:
Q  119 taataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    ||||||| | ||||||||| |||||||||||||||||||||||||||| | ||||| |||||||    
T  10920234 taataaaattcctagaataattagtctgtttaatggaacattaagtatgagttaatcgtgagac 10920297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 2375027 - 2375085
Alignment:
Q  102 tttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacatt 160  Q
    |||||||||||||||||||||||| |||||| |||| ||||||  ||||||||||||||    
T  2375027 tttgttttgtttcaaaataataaactccctataataattagtcaatttaatggaacatt 2375085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 24642568 - 24642605
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttg 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24642568 ccctaatagccaatctatattgattgggtttggctttg 24642605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 6094043 - 6094087
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||    
T  6094043 ccctaatagccaatctatattgattgagtttggctttgtatcatg 6094087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 21940585 - 21940629
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||    
T  21940585 ccctaatagccaatctatattgattggttttggctttgtatcatg 21940629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 22070120 - 22070164
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||    
T  22070120 ccctaatagccaatctatattgattgggtttggttttgtatcatg 22070164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 22171408 - 22171452
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    ||||||||||||||||||||||||||||||||  |||| ||||||    
T  22171408 ccctaatagccaatctatattgattgggtttgattttgtatcatg 22171452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28554803 - 28554847
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||| | ||||||||||||||||||| ||||||    
T  28554803 ccctaatagccaatctttgttgattgggtttggctttgtatcatg 28554847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 32873019 - 32872948
Alignment:
Q  111 tttcaaaataataaagtccctagaatagttagtctgttta-atggaacattaagtataacttaattgtgaga 181  Q
    ||||||||||||||||||| || |||||||  ||  |||| || ||||||||||||| ||||||||||||||    
T  32873019 tttcaaaataataaagtccttataatagttcatccatttatatagaacattaagtatgacttaattgtgaga 32872948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 18288 - 18449
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||    
T  18288 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaattgaacattaagtataacttaattgtgag 18387  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||||||||| ||||||||||    
T  18388 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtg 18449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 18208 - 18252
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  18208 ccctaatagccaatctatattgattgggtttggctttgtatcatg 18252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 83 - 242
Target Start/End: Original strand, 5531 - 5690
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5531 aaggcatttctttattgatttatttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 5630  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    ||| |||||||||| |||| |||||| ||||||| |||||||||||||||||||||||||    
T  5631 cccgttaaacataaggaaattattcttaaagtatatgtagtcaagctttattgagaagtg 5690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5448 - 5492
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||    
T  5448 ccctaatagccaatctatattgtttgggtttggctttgtatcatg 5492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 26197 - 26036
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 180  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||| |||||||||||||||||    
T  26197 acaagacatttctttattgattttgttttgtttcaaaataataaagtccttagaatagttagtccatttaatggaacattaaatataacttaattgtgag 26098  T
Q  181 accccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    |||||||||||||||| ||||||||||| |||||||| |||||||||||||||||| |||||    
T  26097 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgaaaagtg 26036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 26274 - 26231
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcat 44  Q
    ||||||||| |||||||||||||||||||||||||||| |||||    
T  26274 ccctaatagtcaatctatattgattgggtttggctttgtatcat 26231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 83 - 242
Target Start/End: Complemental strand, 230545 - 230387
Alignment:
Q  83 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  230545 aaggcatttctttattgattttgttttgtttcaaaataataaagttcttataatagttagtccgtttaatggaacattaagtataacttaattgtgagac 230446  T
Q  183 cccattaaacataatgaaactattctaaaagtatctgtagtcaagctttattgagaagtg 242  Q
    ||| |||||||||| ||||| ||||| ||||||| |||||||||| ||||||||||||||    
T  230445 ccc-ttaaacataaggaaaccattcttaaagtatttgtagtcaagatttattgagaagtg 230387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 230625 - 230584
Alignment:
Q  4 taatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  230625 taatagccaatctatattgattgggtttggctttgtatcatg 230584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 8510 - 8447
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtc 144  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8510 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtc 8447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8590 - 8546
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||    
T  8590 ccctaatagccaatctatattgattgggttcggctttgtatcatg 8546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 23813 - 23769
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  23813 ccctaatagccaatctatattgattgggtttggctttgtatcatg 23769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0326 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0326
Description:

Target: scaffold0326; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 16535 - 16571
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggcttt 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  16535 ccctaatagccaatctatattgattgggtttggcttt 16571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0326; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 16615 - 16648
Alignment:
Q  81 acaaggcatttctttattgattttgttttgtttc 114  Q
    |||||||||||||||||||||||||||||| |||    
T  16615 acaaggcatttctttattgattttgttttgnttc 16648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 131
Target Start/End: Complemental strand, 10158 - 10127
Alignment:
Q  100 attttgttttgtttcaaaataataaagtccct 131  Q
    ||||||||||||||||||||||||||||||||    
T  10158 attttgttttgtttcaaaataataaagtccct 10127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 10244 - 10202
Alignment:
Q  3 ctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||    
T  10244 ctaatagccaatctatattgattgagtttgactttgtatcatg 10202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 92194 - 92267
Alignment:
Q  110 gtttcaaaataataaagtccctagaatagttagtctgtttaa-tggaacattaagtataacttaattgtgagac 182  Q
    |||| ||| |||||||||| ||||||||  ||||   ||||| ||||||||||||||||||||||| |||||||    
T  92194 gttttaaagtaataaagtctctagaatatctagttattttaaatggaacattaagtataacttaatcgtgagac 92267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0705 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0705
Description:

Target: scaffold0705; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 85 - 41
Alignment:
Q  1 ccctaatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    ||||||||||||||||||| ||||||  |||||||||| ||||||    
T  85 ccctaatagccaatctataatgattgattttggctttgtatcatg 41  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0637 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0637
Description:

Target: scaffold0637; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 8960 - 9000
Alignment:
Q  5 aatagccaatctatattgattgggtttggctttgcatcatg 45  Q
    |||||||||||||| |||| |||||||||||||| ||||||    
T  8960 aatagccaatctatgttgaatgggtttggctttgtatcatg 9000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University