View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17376_high_3 (Length: 355)

Name: NF17376_high_3
Description: NF17376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17376_high_3
NF17376_high_3
[»] chr3 (18 HSPs)
chr3 (16-348)||(679744-680076)
chr3 (16-348)||(747662-747999)
chr3 (26-214)||(9595173-9595361)
chr3 (26-188)||(9562507-9562672)
chr3 (38-303)||(2491317-2491587)
chr3 (36-303)||(2475887-2476159)
chr3 (35-304)||(2474346-2474617)
chr3 (139-287)||(755292-755445)
chr3 (139-303)||(7334931-7335100)
chr3 (139-303)||(9566482-9566651)
chr3 (26-104)||(2659674-2659752)
chr3 (36-108)||(2630771-2630843)
chr3 (39-303)||(7443554-7443823)
chr3 (147-303)||(7325065-7325226)
chr3 (35-105)||(755176-755246)
chr3 (35-89)||(9566378-9566432)
chr3 (281-325)||(2634861-2634905)
chr3 (38-108)||(2644902-2644972)


Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 348
Target Start/End: Original strand, 679744 - 680076
Alignment:
Q  16 ttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaacta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679744 ttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaacta 679843  T
Q  116 actcagccaagttgttccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatn 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  679844 actcagccaagttgttccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaata 679943  T
Q  216 nnnnnncttacagaggcatcgaagttggtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaagtggcggcggaga 315  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  679944 aaaaaacttacagaggcatcgaagttggtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaagtggtggcggaga 680043  T
Q  316 tgttatggttccagccgtatggatgatgatgtc 348  Q
    ||||||||||||||||||||||| |||||||||    
T  680044 tgttatggttccagccgtatggacgatgatgtc 680076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 348
Target Start/End: Original strand, 747662 - 747999
Alignment:
Q  16 ttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaacta 115  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||| ||||||||||||    
T  747662 ttacctcgaattgtaagagtattaggagggtaaagttgtgtatgtgtaacaacgatagaagtagataaaaccgaggggattggagaaacatactcaacta 747761  T
Q  116 actcagccaagttgttccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatn 215  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  747762 actcagccaagttgttccaagaggttatcatgaggtggtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaata 747861  T
Q  216 nnnnnncttacagaggcatcgaagttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaagtggcggc 310  Q
          |||||||||||||||||||||     ||||||||||||||| ||||||||||| ||||||||  ||||||||  ||||||||||||||||||||    
T  747862 aaaaaacttacagaggcatcgaagttgtacgagtaatttgatgggaagcctaccgagaaactcagggaaaacatcgaatggaagagtgggaagtggcggc 747961  T
Q  311 ggagatgttatggttccagccgtatggatgatgatgtc 348  Q
    |||||||||||||||||||||||||||| |||||||||    
T  747962 ggagatgttatggttccagccgtatggacgatgatgtc 747999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 26 - 214
Target Start/End: Original strand, 9595173 - 9595361
Alignment:
Q  26 ttgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagccaa 125  Q
    |||| ||| |||||||||||||||||||||| |||||||||| ||||||||| || ||||  ||| ||||||||||||||||   |||||| ||||||||    
T  9595173 ttgtgagagtattaggagggtaaagttgtgtctgtgtaacaatggtagaagtagaaaaaactgagtggattggagaatcatatagaactaaatcagccaa 9595272  T
Q  126 gttgttccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaat 214  Q
    |||||||  ||||| ||||||||||| ||||||||| ||||| ||||||||||| |||||||| ||| ||||||||| |||||||||||    
T  9595273 gttgttcatagaggctatcatgaggtggtggcgctttgttgacaattgaaggtgattctttgcaaattttggatcagaaataagagaat 9595361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 26 - 188
Target Start/End: Original strand, 9562507 - 9562672
Alignment:
Q  26 ttgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagc--- 122  Q
    |||| ||||||||||||| |||||||||||| ||||||||| |||||||||| || |||| | ||||||||||  |||||| || ||| |||||| |       
T  9562507 ttgtgagaatattaggagcgtaaagttgtgtctgtgtaacagcggtagaagtagaaaaaaccaaggggattgggaaatcatgctgaacaaactcaccacg 9562606  T
Q  123 caagttgttccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgc 188  Q
    | |  ||||||||||||||| || ||||| ||||||||||||||| ||||||||||||||||||||    
T  9562607 cgaaatgttccaagaggttaccaagaggtggtggcgcttagttgacaattgaaggtgcttctttgc 9562672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 38 - 303
Target Start/End: Complemental strand, 2491587 - 2491317
Alignment:
Q  38 taggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagccaagttgttccaaga 137  Q
    |||||||||||||||| || ||||||| |||||||||||| || |||| |||||| ||||| |||||||  | ||| |||||| ||||||||||    ||    
T  2491587 taggagggtaaagttgggtctgtgtaataacggtagaagtagaaaaaagcgagggtattggggaatcatgatgaaccaactcacccaagttgttttttga 2491488  T
Q  138 ggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcga 237  Q
    ||||| |||||||| ||||||||| ||||| |||||||| ||||| ||||||||| | ||||||| ||| | |||||       |||||| |||||||||    
T  2491487 ggttaccatgaggtggtggcgctttgttgacaattgaagatgcttttttgcgaatttaggatcagaaattaaagaattgaaaaacttacaaaggcatcga 2491388  T
Q  238 agttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag 303  Q
    || ||     ||||||| |  |||| |||||  ||||||||||| |||||||| ||  ||||||| |||||    
T  2491387 agctgtaccagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaaaggaagagttggaag 2491317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 36 - 303
Target Start/End: Complemental strand, 2476159 - 2475887
Alignment:
Q  36 attaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagccaagttgttccaa 135  Q
    ||||||||||||||||||||| |||||||||||||| ||||| || || |  || |||||||| |||||||||  ||||||||||    |  |||| | |    
T  2476159 attaggagggtaaagttgtgtctgtgtaacaacggttgaagtagaaaatacggatgggattggcgaatcatacagaactaactcacgtgatatgttacga 2476060  T
Q  136 gaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatc 235  Q
     |  ||  |||||||| ||||||||| ||||| ||||||||||| |||||||||||| | ||||||| |||||||||||       |||||| ||||| |    
T  2476059 cattttcgcatgaggtggtggcgctttgttgacaattgaaggtgtttctttgcgaatttaggatcagaaataagagaattgaaaaacttacaaaggcacc 2475960  T
Q  236 gaagttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag 303  Q
    |||| ||     |||||||||  || ||||||   ||||||||||| |||||||| ||| |||||||||||||    
T  2475959 gaagctgtacgagtaatttgacaggtaacctaaacagaatctcaggcaggacatcaaagggaagagtgggaag 2475887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 35 - 304
Target Start/End: Complemental strand, 2474617 - 2474346
Alignment:
Q  35 tattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagccaagttgttcca 134  Q
    |||||||||||||||||||||| ||| |||  |   ||||  | || |||| |||||| ||||| |||||||||| |||  ||||| | |||| ||| |     
T  2474617 tattaggagggtaaagttgtgtctgtataatga---tagacttagaaaaaagcgagggtattggggaatcatactgaacgtactcacctaagtagttgct 2474521  T
Q  135 agaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcat 234  Q
    ||| |||| |||||||| |||||||||  |||||||||||||||| |||||||||||| | ||||  | ||| | |||||       ||||||||||||     
T  2474520 agatgttaccatgaggtggtggcgcttgtttgataattgaaggtgtttctttgcgaatctgggattggaaattaaagaattaaagaacttacagaggcac 2474421  T
Q  235 cgaagtt-----ggtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaagt 304  Q
    ||||| |     |||||||||| ||||| ||||| |||||||||||| |||| ||| ||| ||||||||||||||    
T  2474420 cgaagctgtacaggtaatttgacgggaagcctacagagaatctcaggcaggagatcaaagggaagagtgggaagt 2474346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 139 - 287
Target Start/End: Original strand, 755292 - 755445
Alignment:
Q  139 gttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaa 238  Q
    |||| |||||||| ||||||||| ||||| |||||||| || || ||||||||| ||||||||| |||||||||||       |||||||||||| || |    
T  755292 gttaacatgaggtggtggcgctttgttgacaattgaagatgtttttttgcgaattttggatcagaaataagagaattgaaagacttacagaggcaccgca 755391  T
Q  239 gttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcga 287  Q
    | ||     ||||||||||||||| |||||  ||||||||||| ||||||||||    
T  755392 gctgtccgagtaatttgatgggaagcctacaaagaatctcaggcaggacatcga 755445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 303
Target Start/End: Original strand, 7334931 - 7335100
Alignment:
Q  139 gttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaa 238  Q
    |||| |||||||| ||||||||| ||||| |||||||||||||||||||||||| |||||||||  |||| |||||       ||||||||| |||||||    
T  7334931 gttaccatgaggtggtggcgctttgttgacaattgaaggtgcttctttgcgaattttggatcagagataacagaattaaagaacttacagagacatcgaa 7335030  T
Q  239 gttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag 303  Q
    | ||     ||||||| |  |||| |||||  ||||||||||| |||||||| ||  ||||||| |||||    
T  7335031 gctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaag 7335100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 303
Target Start/End: Original strand, 9566482 - 9566651
Alignment:
Q  139 gttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaa 238  Q
    |||| ||||||||  |||||||| ||||| |||||||| || || ||||||||| ||||||||| |||||||||||       ||| |||||||| ||||    
T  9566482 gttaacatgaggtgatggcgctttgttgacaattgaagatgtttttttgcgaattttggatcagaaataagagaattgaaggacttgcagaggcaccgaa 9566581  T
Q  239 gttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag 303  Q
    | ||     ||||||| ||||||| |||||  ||||||||||| | |||||||||| ||||||| |||||    
T  9566582 gctgtccgagtaatttcatgggaagcctacaaagaatctcaggcaagacatcgaagggaagagtaggaag 9566651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 2659674 - 2659752
Alignment:
Q  26 ttgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatc 104  Q
    |||| ||| ||||||||  |||||||||||| |||||||||||||||||||| || ||||| || ||||||||||||||    
T  2659674 ttgtgagagtattaggaatgtaaagttgtgtttgtgtaacaacggtagaagtagagaaaattgaagggattggagaatc 2659752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 2630843 - 2630771
Alignment:
Q  36 attaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatac 108  Q
    ||||||||||||||||||||| |||| ||||| ||| ||||| || |||| ||| ||||||||||||||||||    
T  2630843 attaggagggtaaagttgtgtttgtgcaacaatggttgaagtagaaaaaagcgaagggattggagaatcatac 2630771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 303
Target Start/End: Original strand, 7443554 - 7443823
Alignment:
Q  39 aggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagccaagttgttccaagag 138  Q
    |||||||| ||||||||| |||||||||   |||||||| || || | ||| ||||||||||||||||    ||| || |||     |||||||| ||||    
T  7443554 aggagggtcaagttgtgtttgtgtaacagacgtagaagtagaaaacaccgatgggattggagaatcatgtaaaacaaaatcatgtctgttgttcctagag 7443653  T
Q  139 gttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaa 238  Q
    |||| |||||||  |||  |||| | ||| ||||||| ||||||||| |||||  | ||||||| ||| | |||||       |||||||||||| ||||    
T  7443654 gttaccatgaggcggtgatgcttggctgaaaattgaaagtgcttcttggcgaaattgggatcagaaattaaagaattgaagaacttacagaggcaccgaa 7443753  T
Q  239 gttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag 303  Q
    ||||     ||||||| |  |||| ||| | ||||||||||||||||| ||||||| |||||||||||||    
T  7443754 gttgtatgagtaatttcacaggaagcctgcagagaatctcagggaggagatcgaagggaagagtgggaag 7443823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 147 - 303
Target Start/End: Original strand, 7325065 - 7325226
Alignment:
Q  147 gaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaagttg---- 242  Q
    ||||| |||||||||||||||||||||||| || ||||||||||| || ||||||| ||| | |||||       |||||||||||| ||||| ||        
T  7325065 gaggtggtggcgcttagttgataattgaagatgtttctttgcgaaagtgggatcagaaattaaagaattgaagaacttacagaggcaccgaagctgtatg 7325164  T
Q  243 -gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag 303  Q
     ||||||| |  |||| ||| | |||||||||||| | |||||||||  ||||||| |||||    
T  7325165 agtaatttcacaggaagcctgcagagaatctcaggtaagacatcgaaaggaagagttggaag 7325226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 755176 - 755246
Alignment:
Q  35 tattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatca 105  Q
    |||| ||||||||||||||||| ||||||| ||| |||||||| || ||||| || |||||||| ||||||    
T  755176 tattgggagggtaaagttgtgtctgtgtaaaaacagtagaagtagaaaaaatggatgggattggggaatca 755246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 9566378 - 9566432
Alignment:
Q  35 tattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcga 89  Q
    |||| ||||||||||||||||| ||||||| ||| |||||||| |||||||||||    
T  9566378 tattgggagggtaaagttgtgtctgtgtaaaaaccgtagaagtagataaaatcga 9566432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 325
Target Start/End: Complemental strand, 2634905 - 2634861
Alignment:
Q  281 acatcgaagagaagagtgggaagtggcggcggagatgttatggtt 325  Q
    ||||||||  ||||||| |||||||||||||||||||||||||||    
T  2634905 acatcgaacggaagagtcggaagtggcggcggagatgttatggtt 2634861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 2644902 - 2644972
Alignment:
Q  38 taggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatac 108  Q
    ||||| ||||||||||||| |||||||||| ||||||||| || |||   || |||||||| |||||||||    
T  2644902 taggaaggtaaagttgtgtttgtgtaacaatggtagaagtagaaaaaggtgaagggattggggaatcatac 2644972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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