View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17376_low_1 (Length: 648)
Name: NF17376_low_1
Description: NF17376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17376_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 279 - 634
Target Start/End: Original strand, 386270 - 386624
Alignment:
| Q |
279 |
tagtatgcaagaatgaaaaatatatcttgtaaatgagtttcatacgtgttctttcaacatttctagttagagcattatctcgttgaaagtcaaaatgtat |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386270 |
tagtatgcaagaatgaaaaatatatcttgtaaatgagtttcatacgtgttctttcaacatttctagttagagcattatctcgttgaaagtcaaaatgtat |
386369 |
T |
|
| Q |
379 |
caaagaagccacaaattatcatctaaggtaactactatcctcgctcgaagtattcaaataatcaaaacttggaaaaagttccaccttgaagatttctcaa |
478 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
386370 |
caaagaagccacaaattatcatctaaggttactactatcctcgctcgaagtattcaaataatcaaaacttgtaaaaagttcca-cttgaagatttctcaa |
386468 |
T |
|
| Q |
479 |
gaagattcaacaacaacaattatctgtccaaaagtgtcaaagattcaaattaaaaagaaagccgtacgccgactcatgcctgaaataggaactcaagaat |
578 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386469 |
gaagattcaacaacaataattatctgtccaaaagtgtcaaagattcaaattaaaaagaaagccgtacgccgactcatgcctgaaataggaactcaagaat |
386568 |
T |
|
| Q |
579 |
acaacgaacttgtggaaaatcctcacaaggcttttttaaaaacaattacttcacag |
634 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386569 |
acaacgaacttgaggaaaatcctcacaaggcttttttaaaaacaattacttcacag |
386624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 386000 - 386245
Alignment:
| Q |
19 |
ttaaagaggtgacaatgaaccataataagatacttcttaaggtttcctgatgaagggatagaaaatcgttatattcacaattattccaactttgaacaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386000 |
ttaaagaggtgacaatgaaccataataagatacttcttaaggttgcctgatgaagggatataaaatcgttatattcacaattattccaactttgaacaat |
386099 |
T |
|
| Q |
119 |
attatgtaaatttggacggacccatgtaaactatatttcaatggcttatgccacaataaaggtagtgggatcataatattgcccttctggtgagttttta |
218 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386100 |
attatgtaaatttggac----ccatgtaaactatatttcaatggcttatgccacaataaaggtagtgggatcataatattgcccttctggtgagttttta |
386195 |
T |
|
| Q |
219 |
gttgacaggtttacatgtatgtaacttacaaatcgatgaaacatgtgggttgttttaatatagta |
283 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
386196 |
gttgacaggtttac---------------aaatcgatgaaacatgtgggttgttttaatatagta |
386245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 548 - 634
Target Start/End: Original strand, 36926447 - 36926533
Alignment:
| Q |
548 |
cgactcatgcctgaaataggaactcaagaatacaacgaacttgtggaaaatcctcacaaggcttttttaaaaacaattacttcacag |
634 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||| |||||| ||||||||||| |||| |||||| | |||||||| ||||||||| |
|
|
| T |
36926447 |
cgactcatgcctgaaaaaggaactcaagagtacaatgaacttttggaaaatcctgacaaagcttttctgaaaacaatcacttcacag |
36926533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 549 - 634
Target Start/End: Complemental strand, 49608358 - 49608273
Alignment:
| Q |
549 |
gactcatgcctgaaataggaactcaagaatacaacgaacttgtggaaaatcctcacaaggcttttttaaaaacaattacttcacag |
634 |
Q |
| |
|
||||||||||||||| | | |||||||||||||| ||||||||||||||||| ||||| ||||||| || ||||||||||||||| |
|
|
| T |
49608358 |
gactcatgcctgaaaaaaggactcaagaatacaatcaacttgtggaaaatcctgacaagccttttttgaagacaattacttcacag |
49608273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University