View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17376_low_2 (Length: 449)
Name: NF17376_low_2
Description: NF17376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17376_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 33557292 - 33557449
Alignment:
| Q |
16 |
agggcaatggagaacaaagtttagttaataggtaacttttctcataaatatgattttccaaccatgccaaacacttcaaaaaggttaacacaaaggaatg |
115 |
Q |
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| T |
33557292 |
agggcaatggagaacaaagtttagttaataggtaacttttctcataaatatgattttccaaccatgccaaacacttcaaaaaggttaacacaaaggaatg |
33557391 |
T |
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| Q |
116 |
atgataagaaccaaattgtttgattattacagtaggagcaataattatcaatgacatgcag |
176 |
Q |
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| T |
33557392 |
atgataagaaccaaattgtttg---attacagtaggagcaataattatcaatgacatgcag |
33557449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 230 - 432
Target Start/End: Original strand, 33557503 - 33557703
Alignment:
| Q |
230 |
gaccaggactt-aattctacaacctccagtacaaaacctctctgctttctcttatcatattttatctacctcttagctagacatagtataatttaattct |
328 |
Q |
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| T |
33557503 |
gaccaggactttaattctacaacctc--gtacaaaacctctctactttctct-atcatattttatctacctcttagctagacttagtataatttaattct |
33557599 |
T |
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| Q |
329 |
tgatagtacatagtagnnnnnnngtccttatcacaaactctccttttccttgataagatagcactttctatgttaaattgagcaatattcaacaggacac |
428 |
Q |
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| T |
33557600 |
tgccggtacatagtaatttttttgtccttatcacaaactctccttttccttgataagatagaactttctatgttaaattgagcaatattcaacaggaccc |
33557699 |
T |
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| Q |
429 |
cgtg |
432 |
Q |
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| T |
33557700 |
cgtg |
33557703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 41179737 - 41179672
Alignment:
| Q |
66 |
tgattttccaaccatgccaaacacttca-aaaaggttaacacaaaggaatgatgataagaaccaaa |
130 |
Q |
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| T |
41179737 |
tgattttccaaccatgccaaacacttcaaaaaagattatcacaaaggaatgatgacaagaaacaaa |
41179672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 34205878 - 34205953
Alignment:
| Q |
66 |
tgattttccaaccatgccaaacacttcaaaaaggttaacacaaaggaatgatgataagaaccaaattgtttgatta |
141 |
Q |
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| T |
34205878 |
tgattttgcaaccatgccaaacacttcaaaaaaaataccacagaggaatgatgataagaacccaattatttgatta |
34205953 |
T |
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