View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17377_low_1 (Length: 667)

Name: NF17377_low_1
Description: NF17377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17377_low_1
NF17377_low_1
[»] chr8 (1 HSPs)
chr8 (18-653)||(28752179-28752814)


Alignment Details
Target: chr8 (Bit Score: 628; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 18 - 653
Target Start/End: Original strand, 28752179 - 28752814
Alignment:
Q  18 tgttcctatactcgaaaagcaaagcattatcttctggtgttgttgctttctcctcggaatcttctttaaaagtagtagttgtctcggatgaaatttcctt 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28752179 tgttcctatactctaaaagcaaagcattatcttctggtgttgttgctttctcctcggaatcttctttaaaagtagtagttgtctcggatgaaatttcctt 28752278  T
Q  118 ataatccttttcatgatttccagcatcaattgattgtattatactgttattgctaatatcatgagtcttttctctttcttttaacactataggagattca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28752279 ataatccttttcatgatttccagcatcaattgattgtattatactgttattgctaatatcatgagtcttttctctttctttcaacactataggagattca 28752378  T
Q  218 ttttccactgagattgtttcttcttttatttgtgaatcagcgacattaacttcattttccaatgaataaatggccgtattggactctgcaccatcattca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28752379 ttttccactgagattgtttcttcttttatttgtgaatcagcgacattaacttcattttccaatgaataaatggccgtattggactctgcaccatcattca 28752478  T
Q  318 ataagattttgtcttgatctaatgcatcttgtgatttaacgtcatgtttcggttcatcttctattgatgaattcttttctgtttgaaatatttcactcac 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28752479 ataagattttgtcttgatctaatgcatcttgtgatttaacgtcatgtttcggttcatcttctattgatgaattcttttctgtttgaaatatttcactcac 28752578  T
Q  418 cttatcctcctcgttgggtatcaccttttgggcttcattttccaatgaatcaatggccgtattggactttgcatcatcaacattcaacaagattttgtct 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28752579 cttatcctcctcgttgggtatcaccttttgggcttcattttccaatgaatcaatggccgtattggactttgcatcatcaacattcaacaagattttgtct 28752678  T
Q  518 tgactcaatgcatcttgtgatttaacatcatgtttcggttcatcatctgttgatgaattctcttctgtttgaaatacttcctcttctgtttgaaatactt 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28752679 tgactcaatgcatcttgtgatttaacatcatgtttcggttcatcatctgttgatgaattctcttctgtttgaaatacttcctcttctgtttgaaatactt 28752778  T
Q  618 tactcaccatatcctcctcgtctggtatcacctttg 653  Q
    ||||||||||||||||||||||||||||||||||||    
T  28752779 tactcaccatatcctcctcgtctggtatcacctttg 28752814  T

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