View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17377_low_2 (Length: 588)
Name: NF17377_low_2
Description: NF17377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17377_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 241 - 495
Target Start/End: Complemental strand, 43194205 - 43193951
Alignment:
| Q |
241 |
catgtgattttcagttacattgtgttttaagtgtgagattgaatcggttgatgacctaaccaatgattatatctaaactgaagtttgttaaatatttgat |
340 |
Q |
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| T |
43194205 |
catgtgattttcagttacattgtgttttaagtgtgagattgaatcggttgatgacctaaccaatgattatatctaaactgaagtctgttaaatatttgat |
43194106 |
T |
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| Q |
341 |
gttattaaaattannnnnnnnnnnnnaattgatatttgatttggttcttggtgttgatgatgctgtctaataatttgagattgaatcgttcagatgagtt |
440 |
Q |
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| T |
43194105 |
gttattaaaattatttttatttttttaattgagatttgatttggttcttggtgttaatgatgctgtctaataatttgagattgaatcgttcagatgagtt |
43194006 |
T |
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| Q |
441 |
aaaaaagtttgttttggctagattatctgaaagttttgatctcaattgaagtggg |
495 |
Q |
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| T |
43194005 |
aaaaaagtttgttttggctagattatctgaaagttttgatctcaattgaagtggg |
43193951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 43194417 - 43194323
Alignment:
| Q |
20 |
atgatgatgttgccttgtattttgagattgaatcgttcaggtgacttaacttagtttgttttggttaggttacctgaacggttcaatcttaactt |
114 |
Q |
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| T |
43194417 |
atgatgatgttgccttgtattttgagattgaatcgttcaggtgacttaacttagtttgttttggttaggttacctgaacggttcaatcttaactt |
43194323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 43194567 - 43194495
Alignment:
| Q |
42 |
tgagattgaatcgttcaggtgacttaacttagtttgttttggttaggttacctgaacggttcaatcttaactt |
114 |
Q |
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| T |
43194567 |
tgagattgaatcgttctgatgacctaatcgagtttgttttggttaggttatctgaacgattcaatcttgactt |
43194495 |
T |
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