View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17377_low_3 (Length: 526)
Name: NF17377_low_3
Description: NF17377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17377_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 18 - 508
Target Start/End: Complemental strand, 51532581 - 51532091
Alignment:
| Q |
18 |
ataaattggggttaataataacccgtctccgttttaattttacatagtttttctttgatacaataccaagaactgttatgaattgccacttgtttaatca |
117 |
Q |
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| T |
51532581 |
ataaattggggttaataataacccgtctccgttttaattttacatagtttttctttgatacaataccaagaactgttatgaattcccacttgtttaatca |
51532482 |
T |
|
| Q |
118 |
ctaaatacagtattatactgagacatacatggttttaagttaaatttactttacactgtcaaacctgcagtgtaagttactccagcggaaggtaaccaaa |
217 |
Q |
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| T |
51532481 |
ctaaatacagtattatactgagacatacatggttttaagttaaatttactttacactgtcaaacctgcagtgtaagttactccagcggaaggtaaccaaa |
51532382 |
T |
|
| Q |
218 |
gatcccccagaataaattgagctacagtaaacttttcagcctcgctcgaatcattcattacatggtacccagaccatttcacccgattcgctaccccagc |
317 |
Q |
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| T |
51532381 |
gatcccccaaaataaattgagctacagtaaacttttcagcctcgctcgaatcattcattacatggtacccagaccatttcacccgattcgctaccccagc |
51532282 |
T |
|
| Q |
318 |
acccggtccggagttcctgtattcactgtagtacaatgtatccaaaccaacacttccattgtactctagccacccttcgggacttatcgcgttactcata |
417 |
Q |
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| T |
51532281 |
acccggtccggagttcatgtattcactgtagtacaatgtatccaaaccaacacttccattgtactctagccacccttcgggacttatcgcgttactcata |
51532182 |
T |
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| Q |
418 |
taggattgcatgaaaattgttcgcgaataaggcctccaaggtctaccaaggtatgttcggatggttgcaataaaaggtagaaggtcaaagt |
508 |
Q |
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| T |
51532181 |
taggattgcatgaaaattgttcgcgaataaggcctccaaggtctaccaaggtatgttcggatggttgcaataaaaggtagaaggtcaaagt |
51532091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 24 - 484
Target Start/End: Complemental strand, 51526837 - 51526368
Alignment:
| Q |
24 |
tggggttaataataacccgtctccgttttaattttacatagtttttctttgatacaataccaagaactgttatgaattgccac---ttgtttaatcacta |
120 |
Q |
| |
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||||||||| | |||||||| ||| |||| ||||||||| |||||||||||||||||||||||||| ||| |||||| | || | ||||||||||| |
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| T |
51526837 |
tggggttaacagtaacccgtgtcc-ttttgcttttacatactttttctttgatacaataccaagaaccgttgtgaattacaacaactcttttaatcacta |
51526739 |
T |
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| Q |
121 |
aatacagtattatactgagacatacatggtttta-------agttaaatttactttacactgtcaaacctgcagtgtaagttactccagcggaaggtaac |
213 |
Q |
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| T |
51526738 |
aatacaatattatatttagacatacatgaattaatttgtcaagttaaatttactttacactttcaaaccagaagtgtaagttacaccggtggaaggtaac |
51526639 |
T |
|
| Q |
214 |
caaagatcccccagaataaattgagctacagtaaacttttcagcctcgctcgaatcattcattacatggtacccagaccatttcacccgattcgctaccc |
313 |
Q |
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||||||| |||| |||||||||||| ||||| || || |||||| ||||||||||||| ||||||||| || |||||||||||||| || ||||||| |
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| T |
51526638 |
caaagattcccctcaataaattgagccacagtgaatttagtagcctcactcgaatcattcaatacatggtatcctgaccatttcacccggttagctaccc |
51526539 |
T |
|
| Q |
314 |
cagcacccggtccggagttcctgtattcactgtagtacaatgtatccaaaccaacacttccattgtactctagccacccttcgggacttatcgcgttact |
413 |
Q |
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| ||||||||||| |||||| |||||||| |||||||||||| | |||| ||| | | || || |||||| ||||||||| || ||||| |||| ||| |
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| T |
51526538 |
cggcacccggtccagagttcatgtattcagcgtagtacaatgtgttcaaagcaaaattaccgttccactctaaccacccttctggccttattgcgtcact |
51526439 |
T |
|
| Q |
414 |
catataggattgcatgaaaattgttcgcgaataaggcctccaaggtctaccaaggtatgttcggatggttg |
484 |
Q |
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||| ||||||||||| ||||||||||||||||||| | |||| |||||||||||||||||| ||||||||| |
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| T |
51526438 |
catgtaggattgcataaaaattgttcgcgaataagtcttccagggtctaccaaggtatgttgggatggttg |
51526368 |
T |
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