View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17377_low_5 (Length: 395)
Name: NF17377_low_5
Description: NF17377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17377_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 385
Target Start/End: Original strand, 8438814 - 8439174
Alignment:
| Q |
19 |
gagagatagagttagtttaaaaaaggatagagagaaagtcatcaagaatagacaatcctaacctaatttaaatatagtttaagtgagatatgaatgtgat |
118 |
Q |
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| T |
8438814 |
gagagatagagttagtttaaagaaggatagagagaaagtcatcaaaaatagacaatcctaacctaatttaaatatagtttaagtgagatatgaatgtgat |
8438913 |
T |
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| Q |
119 |
gatcggacataggggcaaacccctatttattttatttctaagttttgtgcaggttgtttctatcttttacttagataatcgtttcaagccaatgatattg |
218 |
Q |
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| T |
8438914 |
gatcagacataggggcaaacccctatttattgtatttctaagttttgtgcaggttgtttctatcttt-acttagataatcgtttcaagccaatgatattg |
8439012 |
T |
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| Q |
219 |
taaataagcttaaggaattcacttctttcagctgggacccaatccattttaaaataattgtaaaagatgtgttaagtggtgattttatcactaataatag |
318 |
Q |
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| T |
8439013 |
taaataagcttaaggaattcacttctttcagctgggacccaatccattttaaaataattgtaaaagatttgttcagtggtgattttatcactaataatag |
8439112 |
T |
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| Q |
319 |
aaaaggaaaataatgatattgcattgatcaaattaaataccttcctcatagaagacccggacctttg |
385 |
Q |
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| T |
8439113 |
aaaaggaaaataatgatattgcattgatc-----aaatacctttctcatagaagacccggacctttg |
8439174 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 351
Target Start/End: Complemental strand, 31947416 - 31947332
Alignment:
| Q |
269 |
aaaataattgtaaaagatgtgttaagtggtgattttatcactaataata--gaaaaggaaaataatgatattgcattgatcaaat |
351 |
Q |
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| T |
31947416 |
aaaatgattgtgaaagatatgttcaatggtgattttgtcactaataataatagaaaggaaaacaatgatattgcattgataaaat |
31947332 |
T |
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