View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17377_low_6 (Length: 342)

Name: NF17377_low_6
Description: NF17377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17377_low_6
NF17377_low_6
[»] chr8 (5 HSPs)
chr8 (15-325)||(4651734-4652042)
chr8 (75-130)||(23676200-23676256)
chr8 (164-197)||(13456495-13456528)
chr8 (283-323)||(23676307-23676347)
chr8 (166-214)||(39642627-39642675)
[»] chr5 (1 HSPs)
chr5 (163-214)||(22020845-22020896)
[»] chr2 (4 HSPs)
chr2 (162-217)||(8162047-8162102)
chr2 (163-217)||(33582012-33582066)
chr2 (162-214)||(7799017-7799069)
chr2 (163-214)||(21213811-21213862)
[»] chr3 (5 HSPs)
chr3 (164-217)||(20501735-20501788)
chr3 (162-214)||(32638987-32639039)
chr3 (163-214)||(52769966-52770017)
chr3 (176-217)||(21960590-21960631)
chr3 (163-219)||(36720418-36720474)
[»] chr1 (7 HSPs)
chr1 (162-219)||(28411367-28411424)
chr1 (162-214)||(11068825-11068877)
chr1 (171-217)||(26232352-26232398)
chr1 (163-217)||(27127336-27127390)
chr1 (163-217)||(28283570-28283624)
chr1 (162-198)||(2220030-2220066)
chr1 (162-214)||(40814390-40814442)
[»] chr7 (2 HSPs)
chr7 (162-206)||(41975937-41975981)
chr7 (163-217)||(23945900-23945954)
[»] scaffold0074 (1 HSPs)
scaffold0074 (163-214)||(45742-45793)
[»] scaffold0008 (1 HSPs)
scaffold0008 (162-217)||(49345-49400)
[»] chr6 (1 HSPs)
chr6 (163-198)||(12234490-12234525)
[»] chr4 (5 HSPs)
chr4 (163-217)||(49262667-49262721)
chr4 (164-197)||(17777058-17777091)
chr4 (166-219)||(52254390-52254443)
chr4 (160-192)||(15786274-15786306)
chr4 (162-198)||(51948538-51948574)


Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 15 - 325
Target Start/End: Complemental strand, 4652042 - 4651734
Alignment:
Q  15 aaaatgtgatcttatatagcgattcaacctcacttaatttaaattcttcatatgttttattctcttgatgaatgtgaaagattatctctctcatttataa 114  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4652042 aaaatgcgatcttatatagcgattcaacctcacttaatttaaattcttcatatgttttactctcttgatgaatgtgaaagattatctctctcatttataa 4651943  T
Q  115 attacatatgagatgaccaatttccattttttatatttttgaaaaagttaaattgacactggagagaatcgaatctgagacctcaat-gaggaacacact 213  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||  |||||||||||||||||||||||||||  ||||||||| |    
T  4651942 attacatatgagatgaccaatttccattttttat-ttttttaaaaagttaaattaacatcggagagaatcgaatctgagacctcaataaaggaacacatt 4651844  T
Q  214 ctcataatcaaaatggatttcaatactcatatttgatttccattttaaaacgagttgannnnnnnnnngttttcaataaaatatattttccaggaatttt 313  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||    
T  4651843 ctcataatcaaagtgggtttcaatactcatatttgatttccattttaaaacgagttga--ttttttttgttttcaataaaatatattttccaggaatttt 4651746  T
Q  314 gtaggaccacat 325  Q
    ||||||||||||    
T  4651745 gtaggaccacat 4651734  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 23676200 - 23676256
Alignment:
Q  75 tctcttgatgaatg-tgaaagattatctctctcatttataaattacatatgagatga 130  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||    
T  23676200 tctcttgatgaatggtgaaagattatctctttcatttataaattacatatgggatga 23676256  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 13456495 - 13456528
Alignment:
Q  164 aaattgacactggagagaatcgaatctgagacct 197  Q
    ||||||||||| ||||||||||||||||||||||    
T  13456495 aaattgacactagagagaatcgaatctgagacct 13456528  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 23676307 - 23676347
Alignment:
Q  283 ttttcaataaaatatattttccaggaattttgtaggaccac 323  Q
    |||||||||||||||||||||||  || |||||||||||||    
T  23676307 ttttcaataaaatatattttccaaaaaatttgtaggaccac 23676347  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 39642627 - 39642675
Alignment:
Q  166 attgacactggagagaatcgaatctgagacctcaatgaggaacacactc 214  Q
    |||||||| |||||||||||||  |||||||| ||||| ||||||||||    
T  39642627 attgacaccggagagaatcgaagatgagaccttaatgaagaacacactc 39642675  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 22020845 - 22020896
Alignment:
Q  163 taaattgacactggagagaatcgaatctgagacctcaatgaggaacacactc 214  Q
    |||||| |||||||||||||||||||||||||| |||| ||||| |||||||    
T  22020845 taaattaacactggagagaatcgaatctgagacttcaaggaggagcacactc 22020896  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 8162047 - 8162102
Alignment:
Q  162 ttaaattgacactggagagaatcgaatctgagacctcaatgaggaacacactctca 217  Q
    ||||||||||||||||||||||| ||  ||||||||||| |||||||||| |||||    
T  8162047 ttaaattgacactggagagaatccaacttgagacctcaaggaggaacacattctca 8162102  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 33582066 - 33582012
Alignment:
Q  163 taaattgacactggagagaatcgaatctgagacctcaatgaggaacacactctca 217  Q
    |||||||||| | |||||||||||| |||||||||||| ||||| ||||||||||    
T  33582066 taaattgacattagagagaatcgaacctgagacctcaaggaggagcacactctca 33582012  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 7799017 - 7799069
Alignment:
Q  162 ttaaattgacactggagagaatcgaatctgagacctcaatgaggaacacactc 214  Q
    |||||||| |||||||||||||||||||||||| ||| | ||||| |||||||    
T  7799017 ttaaattggcactggagagaatcgaatctgagatctcgaggaggagcacactc 7799069  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 21213862 - 21213811
Alignment:
Q  163 taaattgacactggagagaatcgaatctgagacctcaatgaggaacacactc 214  Q
    ||||||| ||| || |||||||||| |||||||||||| |||||||||||||    
T  21213862 taaattggcaccggggagaatcgaacctgagacctcaaggaggaacacactc 21213811  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 20501788 - 20501735
Alignment:
Q  164 aaattgacactggagagaatcgaatctgagacctcaatgaggaacacactctca 217  Q
    |||||| ||||||||||||||||| ||||||||| || ||||| ||||||||||    
T  20501788 aaattggcactggagagaatcgaacctgagaccttaaggaggagcacactctca 20501735  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 32639039 - 32638987
Alignment:
Q  162 ttaaattgacactggagagaatcgaatctgagacctcaatgaggaacacactc 214  Q
    |||||||||||||||||| ||||||| |||||||||| | || ||||||||||    
T  32639039 ttaaattgacactggagaaaatcgaacctgagacctcgaagatgaacacactc 32638987  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 52769966 - 52770017
Alignment:
Q  163 taaattgacactggagagaatcgaatctgagacctcaatgaggaacacactc 214  Q
    ||||||||||||  ||||||||||| |||||||||||| ||||| |||||||    
T  52769966 taaattgacactaaagagaatcgaacctgagacctcaaggaggagcacactc 52770017  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 21960631 - 21960590
Alignment:
Q  176 gagagaatcgaatctgagacctcaatgaggaacacactctca 217  Q
    ||||||||||||||||||||||| | ||||| ||||||||||    
T  21960631 gagagaatcgaatctgagacctcgaggaggagcacactctca 21960590  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 36720474 - 36720418
Alignment:
Q  163 taaattgacactggagagaatcgaatctgagacctcaatgaggaacacactctcata 219  Q
    |||||||||||| |||||||||||| |||| ||||| | ||||| ||||||| ||||    
T  36720474 taaattgacactagagagaatcgaacctgaaacctcgaggaggagcacactcccata 36720418  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 28411424 - 28411367
Alignment:
Q  162 ttaaattgacactggagagaatcgaatctgagacctcaatgaggaacacactctcata 219  Q
    |||||||| |||  |||||||| |||||||||||||||| ||||| ||||||||||||    
T  28411424 ttaaattggcaccagagagaattgaatctgagacctcaaagaggagcacactctcata 28411367  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 11068825 - 11068877
Alignment:
Q  162 ttaaattgacactggagagaatcgaatctgagacctcaatgaggaacacactc 214  Q
    |||||||||||||||||||||| |||||||||  ||||| ||||| |||||||    
T  11068825 ttaaattgacactggagagaattgaatctgaggtctcaaagaggagcacactc 11068877  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 26232352 - 26232398
Alignment:
Q  171 cactggagagaatcgaatctgagacctcaatgaggaacacactctca 217  Q
    ||||||||||||| ||| |||||||||||| ||||| ||||||||||    
T  26232352 cactggagagaattgaacctgagacctcaaggaggagcacactctca 26232398  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 27127336 - 27127390
Alignment:
Q  163 taaattgacactggagagaatcgaatctgagacctcaatgaggaacacactctca 217  Q
    |||||||||||  |||| |||||||||||||| || || ||||||||||||||||    
T  27127336 taaattgacaccagagaaaatcgaatctgagagcttaaggaggaacacactctca 27127390  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 28283624 - 28283570
Alignment:
Q  163 taaattgacactggagagaatcgaatctgagacctcaatgaggaacacactctca 217  Q
    |||||||||||  |||||||||||| ||||||| |||| || |||||||||||||    
T  28283624 taaattgacaccagagagaatcgaacctgagacatcaaggaagaacacactctca 28283570  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 2220066 - 2220030
Alignment:
Q  162 ttaaattgacactggagagaatcgaatctgagacctc 198  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  2220066 ttaaattgacattggagagaatcgaacctgagacctc 2220030  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 40814390 - 40814442
Alignment:
Q  162 ttaaattgacactggagagaatcgaatctgagacctcaatgaggaacacactc 214  Q
    ||||||||||||| |||||||||||| |||| ||||||| || || |||||||    
T  40814390 ttaaattgacactagagagaatcgaacctgaaacctcaaggatgagcacactc 40814442  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 41975981 - 41975937
Alignment:
Q  162 ttaaattgacactggagagaatcgaatctgagacctcaatgagga 206  Q
    ||||||||||||| ||||||||||||  |||||||||||||||||    
T  41975981 ttaaattgacactagagagaatcgaacttgagacctcaatgagga 41975937  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 23945954 - 23945900
Alignment:
Q  163 taaattgacactggagagaatcgaatctgagacctcaatgaggaacacactctca 217  Q
    |||||||||| | ||||| |||||| |||||||||||||||||| |||| |||||    
T  23945954 taaattgacattagagaggatcgaacctgagacctcaatgaggagcacattctca 23945900  T

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Target: scaffold0074 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 45742 - 45793
Alignment:
Q  163 taaattgacactggagagaatcgaatctgagacctcaatgaggaacacactc 214  Q
    |||||||||||  ||||||||||||  ||||||||||| |||||||||||||    
T  45742 taaattgacaccagagagaatcgaacatgagacctcaaggaggaacacactc 45793  T

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Target: scaffold0008 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 49400 - 49345
Alignment:
Q  162 ttaaattgacactggagagaatcgaatctgagacctcaatgaggaacacactctca 217  Q
    |||||||||||| ||||||||||||| |||| ||||| | ||||| ||||||||||    
T  49400 ttaaattgacaccggagagaatcgaacctgatacctcgaagaggagcacactctca 49345  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 198
Target Start/End: Original strand, 12234490 - 12234525
Alignment:
Q  163 taaattgacactggagagaatcgaatctgagacctc 198  Q
    ||||||||||||||||||||||||| ||||||||||    
T  12234490 taaattgacactggagagaatcgaacctgagacctc 12234525  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 49262667 - 49262721
Alignment:
Q  163 taaattgacactggagagaatcgaatctgagacctcaatgaggaacacactctca 217  Q
    ||||||| |||||| |||||||||| ||||||||||||  |||| ||||||||||    
T  49262667 taaattggcactggggagaatcgaacctgagacctcaacaaggagcacactctca 49262721  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 17777091 - 17777058
Alignment:
Q  164 aaattgacactggagagaatcgaatctgagacct 197  Q
    ||||||||||| ||||||||||||||||||||||    
T  17777091 aaattgacactagagagaatcgaatctgagacct 17777058  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 52254390 - 52254443
Alignment:
Q  166 attgacactggagagaatcgaatctgagacctcaatgaggaacacactctcata 219  Q
    |||| |||||||||||||| || |||| ||||||| ||||| ||||||||||||    
T  52254390 attggcactggagagaatctaacctgaaacctcaaggaggagcacactctcata 52254443  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 15786306 - 15786274
Alignment:
Q  160 agttaaattgacactggagagaatcgaatctga 192  Q
    |||||||||||||||||||| ||||||||||||    
T  15786306 agttaaattgacactggagaaaatcgaatctga 15786274  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 51948574 - 51948538
Alignment:
Q  162 ttaaattgacactggagagaatcgaatctgagacctc 198  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  51948574 ttaaattgacactggagagaattgaacctgagacctc 51948538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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