View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17377_low_8 (Length: 273)
Name: NF17377_low_8
Description: NF17377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17377_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 7 - 189
Target Start/End: Original strand, 43194408 - 43194590
Alignment:
| Q |
7 |
acatcatcatcaacaacaataacaactttcaatcacacnnnnnnnnnnnnnnnttaatttaataaaatcaaatatttaacacacttcaagtcaagattga |
106 |
Q |
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| T |
43194408 |
acatcatcatcaacaacaataacaactttcaatcacaaaaaaaaaaaaaaaaattaatttaataaaatcaaatatttaacacatatcaagtcaagattga |
43194507 |
T |
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| Q |
107 |
atcgttcagataacctaaccaaaacaaactcgattaggtcatcagaacgattcaatctcacaactaaaacacaatgtcactcc |
189 |
Q |
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| T |
43194508 |
atcgttcagataacctaaccaaaacaaactcgattaggtcatcagaacgattcaatctcacaactaaaacacaatgtcactcc |
43194590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 166
Target Start/End: Original strand, 43194305 - 43194395
Alignment:
| Q |
76 |
aaatatttaacacacttcaagtcaagattgaatcgttcagataacctaaccaaaacaaactcgattaggtcatcagaacgattcaatctca |
166 |
Q |
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| T |
43194305 |
aaatatttaacacatttcaagttaagattgaaccgttcaggtaacctaaccaaaacaaactaagttaagtcacctgaacgattcaatctca |
43194395 |
T |
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