View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17378_low_3 (Length: 252)

Name: NF17378_low_3
Description: NF17378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17378_low_3
NF17378_low_3
[»] chr6 (2 HSPs)
chr6 (137-202)||(4298103-4298168)
chr6 (96-137)||(4298043-4298084)
[»] chr2 (2 HSPs)
chr2 (68-138)||(30696504-30696581)
chr2 (13-66)||(30696402-30696455)
[»] chr5 (1 HSPs)
chr5 (87-137)||(24073212-24073262)


Alignment Details
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 4298103 - 4298168
Alignment:
Q  137 tctttttcttgaatagaacaagcaattctcattgtcattataatatgaggctaaaaattaatagtt 202  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||    
T  4298103 tctttttcttgaatagaacaagcaatactcattgtcattattatatgaggccaaaaattaatagtt 4298168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 4298043 - 4298084
Alignment:
Q  96 cctaatctcatgccttattaatattcctttgcaaaacatagt 137  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  4298043 cctaatttcatgccttattaatattcctttgcaaaacatagt 4298084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 30696504 - 30696581
Alignment:
Q  68 ttagtggtccatcaatgtgatattggaac-------ctaatctcatgccttattaatattcctttgcaaaacatagtc 138  Q
    ||||||||||||||||||||||||||||        |||||| ||||||||||||| |||||||||||||||||||||    
T  30696504 ttagtggtccatcaatgtgatattggaatttgaaagctaatcgcatgccttattaacattcctttgcaaaacatagtc 30696581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 30696402 - 30696455
Alignment:
Q  13 caaaggttaacgaaccctcatgcatgtgcttattaattaatattagagcctaat 66  Q
    ||||||||||| ||| |||||| | |||||| | ||||||||||||||||||||    
T  30696402 caaaggttaacaaactctcatgtacgtgcttgtaaattaatattagagcctaat 30696455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 24073262 - 24073212
Alignment:
Q  87 atattggaacctaatctcatgccttattaatattcctttgcaaaacatagt 137  Q
    ||||| || ||||||| |||||||| |||||||||||| ||||||||||||    
T  24073262 atattagagcctaatcacatgcctttttaatattccttagcaaaacatagt 24073212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University