View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17378_low_7 (Length: 216)

Name: NF17378_low_7
Description: NF17378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17378_low_7
NF17378_low_7
[»] chr3 (5 HSPs)
chr3 (1-213)||(11023339-11023551)
chr3 (58-213)||(11014026-11014181)
chr3 (1-184)||(11004561-11004748)
chr3 (1-59)||(11014223-11014281)
chr3 (94-122)||(6992241-6992269)
[»] chr4 (10 HSPs)
chr4 (94-213)||(48872663-48872782)
chr4 (94-213)||(48877967-48878086)
chr4 (100-213)||(45346775-45346888)
chr4 (128-213)||(45342301-45342386)
chr4 (94-213)||(45364060-45364180)
chr4 (94-213)||(45375300-45375420)
chr4 (94-213)||(45382879-45382999)
chr4 (66-192)||(48842761-48842886)
chr4 (136-196)||(48865646-48865706)
chr4 (140-196)||(48856158-48856214)


Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 11023551 - 11023339
Alignment:
Q  1 ttgttgatgaaatggtatcacagcttttggcatagttcgtttatgaaatggtatcacagtcgattcttcaagagctgtagtttcagggggttatgttaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11023551 ttgttgatgaaatggtatcacagcttttggcatagttcgttgatgaaatggtatcacagtcgattcttcaagagctgtagtttcagggggttatgttaaa 11023452  T
Q  101 gatatgatataaaaactattcatgtactttccacctaaaatagctaaagcttttggaattgatgattcacaacaaagttcatctgagctgagtttgcttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11023451 gatatgatataaaaactattcatgtactttccacctaaaatagctaaagcttttggaattgatgattcacaacaaagttcatctgagctgagtttgcttt 11023352  T
Q  201 aacatctaaaaaa 213  Q
    |||||||||||||    
T  11023351 aacatctaaaaaa 11023339  T

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Target: chr3; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 58 - 213
Target Start/End: Complemental strand, 11014181 - 11014026
Alignment:
Q  58 agtcgattcttcaagagctgtagtttcagggggttatgttaaagatatgatataaaaactattcatgtactttccacctaaaatagctaaagcttttgga 157  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||    
T  11014181 agtccattcttcaagagctgtagtttcaaggggttatgttaaagatatgatataaaaactattcatgtattttccacctaaaatagcttaagctttttga 11014082  T
Q  158 attgatgattcacaacaaagttcatctgagctgagtttgctttaacatctaaaaaa 213  Q
    |||||||||||  |||||||||||||||||||||||||||||  ||||||||||||    
T  11014081 attgatgattcctaacaaagttcatctgagctgagtttgcttggacatctaaaaaa 11014026  T

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Target: chr3; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 11004748 - 11004561
Alignment:
Q  1 ttgttgatgaaatggtatcacagcttttggcatagttcgtttatgaaatggtatcacagtcgattcttcaagagctgtag-----tttcagggggttatg 95  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |  ||  ||||| | |||||     |||||||||||||||    
T  11004748 ttgttgatgaaatggtatcacagcttttggcatagtttgttcatgaaatggtatcacaggct-ttgatcaagtggtgtagagtagtttcagggggttatg 11004650  T
Q  96 ttaaagatatgatataaaaactattcatgtactttccacctaaaatagctaaagcttttggaattgatgattcacaacaaagttcatct 184  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||    
T  11004649 ttaaagatatgatataaaaactattcatgtattttccacctaaaaaagctaaagctttttgaattgatgattcacaacatagttcatct 11004561  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 11014281 - 11014223
Alignment:
Q  1 ttgttgatgaaatggtatcacagcttttggcatagttcgtttatgaaatggtatcacag 59  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  11014281 ttgttgatgaaatggtatcacagcttttggcatagtttgttcatgaaatggtatcacag 11014223  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 122
Target Start/End: Original strand, 6992241 - 6992269
Alignment:
Q  94 tgttaaagatatgatataaaaactattca 122  Q
    |||||||||||||||||||||||||||||    
T  6992241 tgttaaagatatgatataaaaactattca 6992269  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 94 - 213
Target Start/End: Original strand, 48872663 - 48872782
Alignment:
Q  94 tgttaaagatatgatataaaaactattcatgtactttccacctaaaatagctaaagcttttggaattgatgattcacaacaaagttcatctgagctgagt 193  Q
    ||||| |||||| ||||||||||| |||||||  ||||||||||||||| || || ||||| |||| |||||||||| || |||||||| |||||||| |    
T  48872663 tgttagagatataatataaaaacttttcatgtgttttccacctaaaataactcaacctttttgaatcgatgattcacgaccaagttcatttgagctgatt 48872762  T
Q  194 ttgctttaacatctaaaaaa 213  Q
    ||||||| ||| ||||||||    
T  48872763 ttgctttgacagctaaaaaa 48872782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 94 - 213
Target Start/End: Original strand, 48877967 - 48878086
Alignment:
Q  94 tgttaaagatatgatataaaaactattcatgtactttccacctaaaatagctaaagcttttggaattgatgattcacaacaaagttcatctgagctgagt 193  Q
    ||||| |||||| ||||||||||| |||||||  ||||||||||||||| || || ||||| |||| |||||||||| || |||||||| |||||||| |    
T  48877967 tgttagagatataatataaaaacttttcatgtgttttccacctaaaataactcaacctttttgaatcgatgattcacgaccaagttcatttgagctgatt 48878066  T
Q  194 ttgctttaacatctaaaaaa 213  Q
    ||||||| ||| ||||||||    
T  48878067 ttgctttgacagctaaaaaa 48878086  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 100 - 213
Target Start/End: Complemental strand, 45346888 - 45346775
Alignment:
Q  100 agatatgatataaaaactattcatgtactttccacctaaaatagctaaagcttttggaattgatgattcacaacaaagttcatctgagctgagtttgctt 199  Q
    |||||| |||||||||| ||| | ||  |||||||||| ||||||| |||||||| ||||||||||||||| |||||| |||||||||||||||| ||||    
T  45346888 agatataatataaaaaccatttacgtgttttccacctacaatagctcaagctttttgaattgatgattcacgacaaagctcatctgagctgagttcgctt 45346789  T
Q  200 taacatctaaaaaa 213  Q
      ||| ||||||||    
T  45346788 ggacagctaaaaaa 45346775  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 128 - 213
Target Start/End: Complemental strand, 45342386 - 45342301
Alignment:
Q  128 tttccacctaaaatagctaaagcttttggaattgatgattcacaacaaagttcatctgagctgagtttgctttaacatctaaaaaa 213  Q
    |||||||||| ||||||| |||||||| ||||||||||||||| |||||| |||||||||||||||| ||||  ||| ||||||||    
T  45342386 tttccacctacaatagctcaagctttttgaattgatgattcacgacaaagctcatctgagctgagttcgcttggacagctaaaaaa 45342301  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 94 - 213
Target Start/End: Complemental strand, 45364180 - 45364060
Alignment:
Q  94 tgttaaagatatgatataaaaactattcatgtactttccacctaaaa-tagctaaagcttttggaattgatgattcacaacaaagttcatctgagctgag 192  Q
    ||||| |||||| ||||||||||| ||||| |  |||| ||||| || ||||| |||||||| ||||||||||||||  |||||||||||||| | ||||    
T  45364180 tgttagagatataatataaaaactgttcatatgttttcaacctataagtagctcaagctttttgaattgatgattcaagacaaagttcatctgtgttgag 45364081  T
Q  193 tttgctttaacatctaaaaaa 213  Q
    |||||||| ||| ||||||||    
T  45364080 tttgctttgacagctaaaaaa 45364060  T

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Target: chr4; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 94 - 213
Target Start/End: Complemental strand, 45375420 - 45375300
Alignment:
Q  94 tgttaaagatatgatataaaaactattcatgtactttccacctaaaa-tagctaaagcttttggaattgatgattcacaacaaagttcatctgagctgag 192  Q
    ||||| |||||| ||||||||||| ||||| |  |||| ||||| || ||||| |||||||| ||||||||||||||  |||||||||||||| | ||||    
T  45375420 tgttagagatataatataaaaactgttcatatgttttcaacctataagtagctcaagctttttgaattgatgattcaagacaaagttcatctgtgttgag 45375321  T
Q  193 tttgctttaacatctaaaaaa 213  Q
    |||||||| ||| ||||||||    
T  45375320 tttgctttgacagctaaaaaa 45375300  T

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Target: chr4; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 94 - 213
Target Start/End: Complemental strand, 45382999 - 45382879
Alignment:
Q  94 tgttaaagatatgatataaaaactattcatgtactttccacctaaaa-tagctaaagcttttggaattgatgattcacaacaaagttcatctgagctgag 192  Q
    ||||| |||||| ||||||||||| ||||| |  |||| ||||| || ||||| |||||||| ||||||||||||||  |||||||||||||| | ||||    
T  45382999 tgttagagatataatataaaaactgttcatatgttttcaacctataagtagctcaagctttttgaattgatgattcaagacaaagttcatctgtgttgag 45382900  T
Q  193 tttgctttaacatctaaaaaa 213  Q
    |||||||| ||| ||||||||    
T  45382899 tttgctttgacagctaaaaaa 45382879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 66 - 192
Target Start/End: Complemental strand, 48842886 - 48842761
Alignment:
Q  66 cttcaagagctgtagtttcagggggttatgttaaagatatgatataaaaactattcatgtactttccacctaaaatagctaaagcttttggaattgatga 165  Q
    ||||||| | ||| ||| |||||| ||| |||| |||||| ||||||||||| |||||||  |||||  ||||||||||| ||  |||| | ||||||||    
T  48842886 cttcaagggatgttgttccaggggttta-gttagagatataatataaaaactgttcatgtgttttccgtctaaaatagcttaacttttttggattgatga 48842788  T
Q  166 ttcacaacaaagttcatctgagctgag 192  Q
    ||||||||||||||||||||| |||||    
T  48842787 ttcacaacaaagttcatctgatctgag 48842761  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 48865646 - 48865706
Alignment:
Q  136 taaaatagctaaagcttttggaattgatgattcacaacaaagttcatctgagctgagtttg 196  Q
    |||||||||| |||||||| |||| ||| |||||| ||||||||||||| |||||||||||    
T  48865646 taaaatagctcaagctttttgaatggatcattcacgacaaagttcatctaagctgagtttg 48865706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 48856158 - 48856214
Alignment:
Q  140 atagctaaagcttttggaattgatgattcacaacaaagttcatctgagctgagtttg 196  Q
    |||||| |||||||| ||||||||||||||| ||||| ||||| |||||| ||||||    
T  48856158 atagcttaagctttttgaattgatgattcacgacaaaattcatttgagctaagtttg 48856214  T

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